The chemical elements that make up a protein molecule. Entertaining chemistry. Such different proteins

Ministry of Education and Science Russian Federation

Federal Agency for Education

South Ural State University

Department of Commodity Science and Expertise of Consumer Goods

COURSE WORK

in the discipline "Commodity research, examination and standardization"

on the topic "Study of the elements of the chemical composition of food products (on the example of proteins)"

Completed:

Abidullina Eleonora

Group Kom-234

Checked by: Cherkasova Elvira Vyacheslavovna

Chelyabinsk

Introduction……………………………………………………………………….

1. Literature review

1.1. General concepts about proteins

1.1.1. The chemical nature of proteins……………………………….....

1.1.2. Classification of proteins………………………………………..

1.1.3. Properties of proteins……………………………………………….

1.2. The influence of proteins on the human body…………………………….

1.3. Changes in protein content during technological processing……………………………………………………………………...

1.4. Changes in protein content during storage…………………….

2. Practical part

2.1. Characteristics of quantitative methods for determining the content of proteins……………………………………………………………….

2.2. Characteristics of qualitative methods for determining the content of proteins…………………………………………………………………………….

3. Experimental part

3.1. Rationale for the choice of the object of study……………………….

3.2. Analysis of the results of own research…………………..

Conclusion…………………………………………………………………………...

Bibliography……………………………………………………………

Application……………………………………………………………………

Introduction

Proteins are the main plastic material for the growth, development and renewal of the body. They are the main structural elements of all tissues, are part of the liquid environment of the body. Food proteins are spent on the construction of red blood cells and hemoglobin, enzymes and hormones, and are actively involved in the development of protective factors - antibodies.

With insufficient protein content in the diet, severe disorders (hypotrophy, anemia, etc.) can develop in the body, more often acute respiratory diseases occur, which take a protracted course. However, too much protein can be detrimental to health. With prolonged use of high-protein foods, the function of the kidneys and liver suffers, nervous excitability increases, allergic reactions often appear, intoxications are possible due to incomplete breakdown and oxidation of proteins with the formation of toxic substances.

The most typical reason for the imbalance of diets is insufficient consumption of the main sources of complete animal protein (meat, fish, milk, eggs), vegetable oils, fresh vegetables and fruits.

Therefore, the study of the elements of the chemical composition of food products, and in particular proteins, is not only important, but also a very topical issue today.

The purpose of the work is to identify the importance of proteins for the human body and the main sources of proteins.

In the course of this work, the following main tasks are set: the study of the chemical composition of proteins, their effect on the human body, the problems of processing and storing proteins, their properties, the study of methods for studying the protein content in food products, checking whether the actual protein content in the product is normalized.

1. Literature review

1.1. General concepts about proteins

1.1.1. Chemical nature of proteins

Peptide bond

Proteins are irregular polymers built from amino acid residues, the general formula of which in an aqueous solution at pH values ​​close to neutral can be written as NH3 + CHRCOO - . Residues of amino acids in proteins are interconnected by an amide bond between amino and carboxyl groups. A peptide bond between two amino acid residues is usually called a peptide bond, and polymers built from amino acid residues connected peptide bonds are called polypeptides. A protein as a biologically significant structure can be either a single polypeptide or several polypeptides that form a single complex as a result of non-covalent interactions.

Elemental composition of proteins

Studying the chemical composition of proteins, it is necessary to find out, firstly, what chemical elements they consist of, and secondly, the structure of their monomers. To answer the first question, the quantitative and qualitative composition of the chemical elements of the protein is determined. Chemical analysis showed the presence in all proteins of carbon (50-55%), oxygen (21-23%), nitrogen (15-17%), hydrogen (6-7%), sulfur (0.3-2.5%) . Phosphorus, iodine, iron, copper and some other macro- and microelements were also found in the composition of individual proteins, in various, often very small amounts.

The content of the main chemical elements in proteins can vary, with the exception of nitrogen, the concentration of which is characterized by the greatest constancy and averages 16%. In addition, the content of nitrogen in other organic substances is low. In accordance with this, it was proposed to determine the amount of protein by its constituent nitrogen. Knowing that 1 g of nitrogen is contained in 6.25 g of protein, the found amount of nitrogen is multiplied by a factor of 6.25 and the amount of protein is obtained.

To determine the chemical nature of protein monomers, it is necessary to solve two problems: to separate the protein into monomers and to find out their chemical composition. The breakdown of a protein into its component parts is achieved by hydrolysis - prolonged boiling of the protein with strong mineral acids (acid hydrolysis) or bases (alkaline hydrolysis). Boiling at 110°C with HCl for 24 hours is most commonly used. At the next stage, the substances that make up the hydrolyzate are separated. For this purpose, various methods are used, most often chromatography (for more details, see the chapter “Research methods ...”). Amino acids are the main part of the separated hydrolysates.

Amino acids

Currently, up to 200 different amino acids have been found in various objects of wildlife. In the human body, for example, there are about 60 of them. However, proteins contain only 20 amino acids, sometimes called natural ones.

Amino acids are organic acids in which the hydrogen atom of the carbon atom is replaced by an amino group - NH2. Therefore, by chemical nature, these are amino acids with the general formula:

From this formula, it can be seen that the composition of all amino acids includes the following general groups: - CH2, - NH2, - COOH. Side chains (radicals - R) of amino acids differ. The chemical nature of radicals is diverse: from a hydrogen atom to cyclic compounds. It is the radicals that determine the structural and functional features of amino acids.

All amino acids, except for the simplest aminoacetic to-you glycine (NH3 + CH2COO-) have a chiral Ca atom and can exist in the form of two enantiomers (optical isomers): L-isomer and D-isomer.

Proteins are built from the twenty basic amino acids, but the rest, quite diverse amino acids, are formed from these 20 amino acid residues already in the composition of the protein molecule. Among these transformations, first of all, the formation of disulfide bridges during the oxidation of two cysteine ​​residues in the composition of already formed peptide chains should be noted. As a result, a diaminodicarboxylic acid cystine residue is formed from two cysteine ​​residues. In this case, cross-linking occurs either within one polypeptide chain or between two different chains. As a small protein that has two polypeptide chains connected by disulfide bridges, as well as crosslinks within one of the polypeptide chains:

GIVEQCCASVCSLYQLENYCN

FVNQHLCGSHLVEALYLVCGERGFFYTPKA

Amino acids in an aqueous solution are in an ionized state due to the dissociation of amino and carboxyl groups that make up the radicals. In other words, they are amphoteric compounds and can exist either as acids (proton donors) or as bases (donor acceptors).

All amino acids, depending on the structure, are divided into several groups:

Acyclic. Monoamino monocarboxylic amino acids have one amino and one carboxyl group in their composition, they are neutral in aqueous solution. Some of them have common structural features, which allows them to be considered together:

1. Glycine and alanine. Glycine (glycocol or aminoacetic acid) is optically inactive - it is the only amino acid that does not have enantiomers. Glycine is involved in the formation of nucleic and bile to - t, heme, is necessary for the neutralization of toxic products in the liver. Alanine is used by the body in various carbohydrate and energy metabolism processes. Its isomer b-alanine is an integral part of the vitamin pantothenic to-you, coenzyme A (CoA), extractive substances of muscles.

2. Serine and threonine. They belong to the group of hydrohydroxy acids, because. have a hydroxyl group. Serine is part of various enzymes, the main protein of milk - casein, as well as many lipoproteins. Threonine is involved in protein biosynthesis, being an essential amino acid.

3. Cysteine ​​and methionine. Amino acids containing a sulfur atom. The value of cysteine ​​is determined by the presence of a sulfhydryl (-SH) group in its composition, which gives it the ability to easily oxidize and protect the body from substances with a high oxidizing ability (in case of radiation injury, phosphorus poisoning). Methionine is characterized by the presence of an easily mobile methyl group, which is used for the synthesis of important compounds in the body (choline, creatine, thymine, adrenaline, etc.)

4. Valine, leucine and isoleucine. They are branched amino acids that are actively involved in metabolism and are not synthesized in the body.

Monoaminodicarboxylic amino acids have one amino and two carboxyl groups and give an acidic reaction in aqueous solution. These include aspartic and glutamine to-you, asparagine and glutamine. They are part of the inhibitory mediators of the nervous system.

Diaminomonocarboxylic amino acids in aqueous solution have an alkaline reaction due to the presence of two amine groups. Related to them, lysine is necessary for the synthesis of histones and also in a number of enzymes. Arginine is involved in the synthesis of urea, creatine.

Cyclic. These amino acids have an aromatic or heterocyclic nucleus in their composition and, as a rule, are not synthesized in the human body and must be supplied with food. They are actively involved in a variety of metabolic processes. Thus, phenylalanine serves as the main source for the synthesis of tyrosine, a precursor of a number of biologically important substances: hormones (thyroxine, adrenaline), and some pigments. Tryptophan, in addition to participating in protein synthesis, is a component of vitamin PP, serotonin, tryptamine, and a number of pigments. Histidine is necessary for the synthesis of proteins, is a precursor of histamine, which affects blood pressure and secretion of gastric juice.

1.1.2. Protein classification

All proteins, depending on the structure, are divided into simple - proteins, consisting only of amino acids, and complex - proteins that have a non-protein proteistic group.

Proteins

Proteins are simple proteins, consisting only of the protein part. They are widely distributed in animals and flora. These include albumins and globulins, which are found in almost all animal and plant cells, biological fluids and perform important biological functions. Albumins are involved in maintaining the osmotic pressure of the blood (create oncotic pressure), transport various substances with the blood. Globulins are part of the enzymes that form the basis of immunoglobulins that act as antibodies. In the blood serum, there is a constant ratio between these two components - the albumin-globulin coefficient (A / G), equal to 1.7 - 2.3 and having an important diagnostic value.

Other representatives of proteins are protamines and histones - basic proteins containing a lot of lysine and arginine. These proteins are part of the nucleoproteins. Another major protein, collagen, forms the extracellular substance of the connective tissue and is found in the skin, cartilage, and other tissues.

Proteids

Proteins are complex proteins consisting of protein and non-protein parts. The name of the protein is determined by the name of its prosthetic group. So, nucleic acids are a non-protein part of nucleoproteins, phosphoric acid is part of phosphoproteins, carbohydrates are glycoproteins, and lipids are lipoproteins.

Nucleoproteins. They are important, because their non-protein part is represented by DNA and RNA. The prosthetic group is represented mainly by histones and protamines. Such complexes of DNA with histones are found in spermatozoa, and with histones - in somatic cells, where the DNA molecule is “wound” around histone molecules. Nucleoproteins by their nature are extracellular viruses - these are complexes of viral nucleic acid and a protein shell - capsid.

Chromoproteins. They are complex proteins, the prosthetic group of which is represented by colored compounds. Chromoproteins include hemoglobin, myoglobin (muscle protein), a number of enzymes (catalase, peroxidase, cytochromes), as well as chlorophyll.

Hemoglobin (Hb) consists of a globin protein and a non-protein part of the heme, which includes an Fe(II) atom connected to protoporphyrin. The hemoglobin molecule consists of 4 subunits: two a and two b and, accordingly, contains four polypeptide chains of two varieties. Each a-chain contains 141, and b-chain - 146 amino acid residues.

myoglobin. A chromoprotein found in muscles. It consists of only one chain, analogous to the subunit of hemoglobin. Myoglobin is the respiratory pigment in muscle tissue. It binds to oxygen much easier than hemoglobin, but it is more difficult to release it. Myoglobin creates oxygen reserves in the muscles, where its amount can reach 14% of the body's total oxygen. This is important, especially for the work of the muscles of the heart. A high content of myoglobin was found in marine mammals (seal, walrus), which allows them to stay under water for a long time.

Glycoproteins. They are complex proteins whose prosthetic group is formed by derivatives of carbohydrates (amino sugars, hexuronic acids). Glycoproteins are part of cell membranes. Thus, the lung walls of bacteria are built from peptidoglycans, which are derivatives of linear polysaccharides bearing peptide fragments covalently linked to them. These fragments carry out crosslinking of polysaccharide chains with the formation of a mechanically strong network structure. For example, the cell wall of E. coli is built from polysaccharide chains formed by N-acetylglucosamine residues linked by b-(1®4) bonds, with each second residue carrying a fragment attached to it at the C3 atom, formed by lactic acid residues linked by amide bonds, L -alanine, D-glutamate (via g-carboxyl), mesodiaminonimelinate and D-alanine.

Glycoproteins are involved in the transport of various substances, in the processes of blood coagulation, immunity, are components of mucus and secretions of the gastrointestinal tract. In arctic fish, glycoproteins play the role of antifreezes - substances that prevent the formation of ice crystals inside their body.

Phosphoproteins. They have phosphoric acid as a non-protein component. Representatives of these proteins are milk caseinogen, vitellin (egg yolk protein), ichthulin (fish roe protein). This localization of phosphoproteins indicates their importance for the developing organism. In adult forms, these proteins are present in bone and nervous tissues.

Lipoproteins. Complex proteins, the prosthetic group of which is formed by lipids. By structure, these are small (150-200 nm) spherical particles, the outer shell of which is formed by proteins (which allows them to move through the blood), and the inner part - by lipids and their derivatives. The main function of lipoproteins is the transport of lipids through the blood. Depending on the amount of protein and lipids, lipoproteins are divided into chylomicrons, low-density lipoproteins (LDL) and high density(HDL), which are sometimes referred to as a- and b-lipoproteins.

Chylomicrons are the largest of lipoproteins and contain up to 98-99% lipids and only 1-2% protein. They are formed in the intestinal mucosa and ensure the transport of lipids from the intestine to the lymph, and then to the blood.

1.1.3. Protein Properties

Proteins have a high molecular weight, some are soluble in water, capable of swelling, are characterized by optical activity, mobility in an electric field, and some other properties.

Proteins are active enter into chemical reactions . This property is due to the fact that the amino acids that make up proteins contain different functional groups that can react with other substances. It is important that such interactions also occur inside the protein molecule, resulting in the formation of peptide, hydrogen disulfide, and other types of bonds. Various compounds and ions can attach to the radicals of amino acids, and hence proteins, which ensures their transport through the blood.

Proteins are macromolecular compounds. These are polymers consisting of hundreds and thousands of amino acid residues - monomers. Accordingly, the molecular weight of proteins is in the range of 10,000 - 1,000,000. So, ribonuclease (an enzyme that breaks down RNA) contains 124 amino acid residues and its molecular weight is approximately 14,000. Myoglobin (muscle protein), consisting of 153 amino acid residues , has a molecular weight of 17,000, and hemoglobin - 64,500 (574 amino acid residues). The molecular weights of other proteins are higher: g-globulin (forms antibodies) consists of 1250 amino acids and has a molecular weight of about 150,000, while the molecular weight of the glutamate dehydrogenase enzyme exceeds 1,000,000.

The most important property of proteins is their ability to exhibit both acidic and basic properties, that is, to act as amphoteric electrolytes. This is ensured by various dissociating groups that make up the amino acid radicals. For example, the acidic properties of the protein are imparted by the carboxyl groups of the aspartic glutamic amino acid, while the alkaline properties are imparted by the radicals of arginine, lysine, and histidine. The more dicarboxylic amino acids a protein contains, the stronger its acidic properties are and vice versa.

The same groupings also have electric charges that form total charge of a protein molecule. In proteins where aspartic and glutamine amino acids predominate, the charge of the protein will be negative; an excess of basic amino acids gives a positive charge to the protein molecule. As a result, in an electric field, proteins will move towards the cathode or anode, depending on the magnitude of their total charge. So, in an alkaline environment (pH 7 - 14), the protein donates a proton and becomes negatively charged, while in an acidic environment (pH 1 - 7), the dissociation of acid groups is suppressed and the protein becomes a cation.

Thus, the factor that determines the behavior of a protein as a cation or anion is the reaction of the medium, which is determined by the concentration of hydrogen ions and is expressed by the pH value. However, at certain pH values, the number of positive and negative charges equalizes and the molecule becomes electrically neutral, i.e. it will not move in an electric field. This pH value of the medium is defined as the isoelectric point of proteins. In this case, the protein is in the least stable state and, with slight changes in pH to the acidic or alkaline side, it easily precipitates. For most natural proteins, the isoelectric point is in a slightly acidic environment (pH 4.8 - 5.4), which indicates the predominance of dicarboxylic amino acids in their composition.

The ability of proteins is important adsorb on its surface, some substances and ions (hormones, vitamins, iron, copper), which are either poorly soluble in water or are toxic (bilirubin, free fatty acids). Proteins transport them through the blood to places of further transformations or neutralization.

Aqueous solutions of proteins have their own characteristics. First, proteins have a high affinity for water, i.e. They hydrophilic. This means that protein molecules, like charged particles, attract water dipoles, which are located around the protein molecule and form a water or hydrate shell. This shell protects the protein molecules from sticking together and precipitating. The size of the hydration shell depends on the structure of the protein. For example, albumins bind more easily to water molecules and have a relatively large water shell, while globulins and fibrinogen attach water worse and have a smaller hydration shell. Thus, the stability of an aqueous solution of a protein is determined by two factors: the presence of a charge on the protein molecule and the water shell around it. When these factors are removed, the protein precipitates. This process can be reversible and irreversible.

The size of protein molecules lies in the range of 1 µm to 1 nm and, therefore, they are colloidal particles which form colloidal solutions in water. These solutions are characterized by high viscosity, the ability to scatter visible light rays, and do not pass through semi-permeable membranes.

1.2. The effect of proteins on the human body

The functions of proteins in the body are diverse. They are largely due to the complexity and diversity of the forms and composition of the proteins themselves. Protein is found in many foods, but the main sources are eggs, milk, and meat (Table 1).

Table 1 - Products containing proteins

Proteins are an indispensable building material. One of the most important functions of protein molecules is plastic. All cell membranes contain protein, the role of which is diverse here. The amount of protein in the membranes is more than half of the mass.

Many proteins have contractile function. These are, first of all, the proteins actin and myosin, which are part of the muscle fibers of higher organisms. Muscle fibers - myofibrils - are long thin filaments consisting of parallel thinner muscle filaments surrounded by intracellular fluid. It contains dissolved adenosine triphosphoric acid (ATP), which is necessary for the implementation of contraction, glycogen - a nutrient, inorganic salts and many other substances, in particular calcium.

The role of proteins in transport of substances in organism. Having different functional groups and a complex structure of the macromolecule, proteins bind and carry many compounds with the blood stream. This is, first of all, hemoglobin, which carries oxygen from the lungs to the cells. In muscles, another transport protein, myoglobin, takes over this function.

Another function of protein is spare. The storage proteins include ferritin - iron, ovalbumin - egg protein, casein - milk protein, zein - corn seed protein.

Regulatory function perform hormone proteins. Hormones are biologically active substances that affect metabolism. Many hormones are proteins, polypeptides, or individual amino acids. One of the best known protein hormones is insulin. This simple protein consists of only amino acids. The functional role of insulin is multifaceted. It reduces blood sugar, promotes the synthesis of glycogen in the liver and muscles, increases the formation of fats from carbohydrates, affects the metabolism of phosphorus, enriches cells with potassium.

The protein hormones of the pituitary gland, an endocrine gland associated with one of the parts of the brain, have a regulatory function. It secretes growth hormone, in the absence of which dwarfism develops. This hormone is a protein with a molecular weight of 27,000 to 46,000.

Vasopressin is one of the important and chemically interesting hormones. It inhibits urination and raises blood pressure. Vasopressin is a cyclic octapeptide.

The regulatory function is also performed by the proteins contained in the thyroid gland - thyroglobulins, the molecular weight of which is about 600,000. These proteins contain iodine in their composition. With the underdevelopment of the gland, metabolism is disturbed.

Another function of proteins is protective. On its basis, a branch of science called immunology was created.

Recently, proteins with receptor function. There are receptors for sound, taste, light, etc.

Mention should also be made of the existence of protein substances that inhibit the action of enzymes. Such proteins have inhibitory functions. When interacting with these proteins, the enzyme forms a complex and loses its activity, completely or partially. Many enzyme inhibitor proteins have been isolated in pure form and have been well studied. Their molecular weights vary widely; often they refer to complex proteins - glycoproteins, the second component of which is carbohydrate.

If proteins are classified only according to their functions, then such a systematization could not be considered complete, since new studies provide many facts that make it possible to distinguish new groups of proteins with new functions. Among them are unique substances - neuropeptides(responsible for the most important life processes: sleep, memory, pain, fear, anxiety).

1.3. Change in protein content during processing

Under the influence of processing, the proteins, fats, carbohydrates, vitamins, minerals and taste substances contained in the products change, which affects the digestibility, nutritional value, weight, taste, smell, color of the products used.

Squirrels coagulate(collapse) at temperatures above 70 ° C, lose their ability to swell, due to which, after heat treatment, the mass of meat and fish decreases.

Products such as meat, fish, eggs cannot be over-steamed, as this reduces their digestibility due to changes in protein molecules: collagen passes into glutin, softening the tissues.

Protein denaturation - this is a complex process in which, under the influence of external factors (temperature, mechanical action, the action of acids, alkalis, ultrasound, etc.), a change occurs in the secondary, tertiary and quaternary structures of the protein macromolecule, i.e. native (natural) spatial structure. The primary structure and, consequently, the chemical composition of the protein do not change. During cooking, denaturation of proteins is most often caused by heating. This process in globular and fibrillar proteins occurs differently. In globular proteins, when heated, the thermal movement of the polypeptide chains inside the globule increases, the hydrogen bonds that held them in a certain position break and the polypeptide chain unfolds and then folds in a new way. In this case, the polar (charged) hydrophilic groups located on the surface of the globule and providing its charge and stability move inside the globule, and reactive hydrophobic groups (disulfide, sulfhydryl, etc.) that are not able to retain water come to its surface. Denaturation is accompanied by changes in the most important properties of the protein: loss of individual properties (for example, a change in the color of meat when it is heated due to denaturation of myoglobin); loss of biological activity (for example, potatoes, mushrooms, apples and a number of other plant products contain enzymes that cause them to darken; when denatured, enzyme proteins lose their activity); increased attack by digestive enzymes (as a rule, heat-treated foods containing proteins are digested more completely and more easily); loss of ability to hydration (dissolution, swelling); loss of stability of protein globules, which is accompanied by their aggregation (folding, or coagulation, of the protein).

Aggregation- this is the interaction of denatured protein molecules, which is accompanied by the formation of larger particles. Outwardly, this is expressed differently depending on the concentration and colloidal state of proteins in solution. So, in low-concentration solutions (up to 1%), the coagulated protein forms flakes (foam on the surface of the broths). In more concentrated protein solutions (for example, egg whites), denaturation forms a continuous gel that retains all the water contained in the colloidal system.

Proteins, which are more or less watered gels (muscle proteins of meat, poultry, fish; proteins of cereals, legumes, flour after hydration, etc.), are compacted during denaturation, while their dehydration occurs with the separation of liquid into environment. The protein gel subjected to heating, as a rule, has a smaller volume, mass, greater mechanical strength and elasticity compared to the original gel of native (natural) proteins. The rate of aggregation of protein sols depends on the pH of the medium. Proteins are less stable near the isoelectric point.

Protein degradation. With prolonged heat treatment, proteins undergo deeper changes associated with the destruction of their macromolecules. At the first stage of changes, functional groups can be split off from protein molecules with the formation of such volatile compounds as ammonia, hydrogen sulfide, hydrogen phosphide, carbon dioxide, etc. Accumulating in the product, they participate in the formation of the taste and aroma of the finished product. During further hydrothermal treatment, proteins are hydrolyzed, while the primary (peptide) bond is broken with the formation of soluble nitrogenous substances of a non-protein nature (for example, the transition of collagen to glutin). The destruction of proteins can be a purposeful culinary treatment that contributes to the intensification of the technological process (the use of enzyme preparations to soften meat, weaken the gluten of the dough, obtain protein hydrolysates, etc.).

Foaming. Proteins are widely used as foaming agents in the production of confectionery (biscuit dough, protein-whipped dough), whipping cream, sour cream, eggs, etc. The stability of the foam depends on the nature of the protein, its concentration, and temperature.

1.4. Change in protein content during storage

During refrigerated storage and freezing of pure protein solutions, aggregation of protein molecules occurs. This process is usually preceded by protein denaturation. The data on the determination of the molecular weight, sedimentation constants, and diffusion rate of the protein particles formed during freezing and refrigerated storage indicate structural changes in this protein. According to some reports, in the process of refrigeration of fish, not only a decrease, but also an increase in protein solubility is possible. Thus, in the Baltic herring, protein solubility in the muscle tissue of frozen fish increased even during rigor mortis.

During the storage of meat, favorable conditions are created for the secondary interaction of lipids with proteins. This is because native proteins are rapidly destroyed during storage, the structural order of cell membranes is lost, and the spatial differentiation of the chemical components of cells is disturbed. In this case, both polar and neutral fats, as well as the products of their decomposition and oxidation, interact with proteins.

Interactions between lipids and proteins occur in foods and when stored frozen. The results of the study of meat and fish showed that the solubility of various protein fractions of muscle tissue, the content of sulfhydryl and disulfide groups in proteins, as well as the activity of a number of enzymes changed in waves.

The qualitative composition of amino acids during storage of the product is determined by many factors and depends on the activity of various enzymes in muscle tissue and individual transformations of amino acids, on the amino acid composition of degradable proteins, their quantity and degree of attack by enzymes, changes in pH, temperature and other interrelated factors.

2. Practical part

2.1. Characteristics of quantitative methods for determining the content of proteins

Methods for the quantitative determination of the protein fraction are based on the determination of the amount of total nitrogen. The most common is the determination by the Kjeldahl method, which allows nitrogen in the form of ammonia to be isolated only from amines and their derivatives, but some nitrogen-containing compounds under these conditions, along with ammonia, also form molecular nitrogen, which leads to underestimated data.

Kjeldahl method.

The Kjeldahl method is relatively simple, well reproducible, standardized and has several modifications.

The method includes three main steps: digestion, distillation and titration.

The method is based on the oxidation of organic substances to CO2, H2O, NH3 when heated with strong sulfuric acid. Ammonia reacts with excess H2SO4 conc and forms ammonium sulfate with it.

R-CHNH2COOH + H2SO4 → CO2 + H2O + NH3;

2NH3 + H2SO4 → (NH4)2SO4.

After the burning of the sample is completed, the excess acid is neutralized with alkali, and the ammonia bound in the form of ammonium sulfate is displaced by an excess of alkali.

(NH4)2SO4 + 2NaOH → Na2SO4 + 2NH4OH.

After burning the sample, nitrogen is determined colorimetrically by the optical density of colored solutions obtained by interaction with Nessler's reagent.

Ammonia and ammonium salts are able to form with Nessler's reagent (double salt of mercury iodide and potassium iodide, dissolved in caustic potassium). Mercurammonium iodide is a yellow-brown substance.

NH4OH + 2(HgI2KI) + 3KOH = OHg2NH2I + 7KI + 3H2O.

Method of formal titration.

Another quantitative method for determining protein content is the formal titration method, which is commonly used in dairies.

The method can only be used for the analysis of fresh raw milk with an acidity not higher than 22 ºT. Canned samples cannot be controlled by this method.

The method consists in blocking the NH2 groups of the product proteins with the introduced formalin with the formation of methyl derivatives of proteins, the carboxyl groups of which can be neutralized with alkali:

HOOC – R – NH2 + 2HCHO → HCHO – R – N(CH2OH)2;

HCHO – R – N(CH2OH)2 + NaOH → NaOH – R – N(CH2OH)2 + H2O.

The amount of alkali used for titration of acidic carboxyl groups is recalculated for the mass fraction of proteins.

The study is carried out according to the following scheme:

In a flask with a capacity of 100 cm³, 20 cm³ of the test product, 10-12 drops of 1% phenolphthalein solution are measured and titrated with 0.1 N sodium hydroxide solution until a pink color corresponding to the color of the standard appears. Then, 4 ml of neutralized 40% formalin are added with an automatic measuring device and titrated again with 0.1 N sodium hydroxide solution until the color of the standard is obtained. The amount of alkali used for the second titration (during the first titration, it is spent on neutralizing substances that cause the acidity of the product), is multiplied by a factor of 0.959 and the mass fraction of proteins in the product is obtained in percent.

A table can be used to convert the amount of sodium hydroxide solution to percent protein.

Consumption of 0.1N NaOH solution, ml

Mass fraction of protein, %

Consumption of 0.1N NaOH solution, ml

Mass fraction of protein, %

Table 2 - Dependence of the mass fraction of proteins on the volume of alkali solution used for titration of samples in the presence of formalin

2.2. Characteristics of qualitative methods for determining the content of proteins

Protein precipitation reactions

Proteins in solution and, accordingly, in the body are preserved in their native state due to stability factors, which include the charge of the protein molecule and the hydration shell around it. Removal of these factors leads to gluing of protein molecules and their precipitation. Protein precipitation can be reversible or irreversible, depending on the reagents and reaction conditions. In laboratory practice, precipitation reactions are used to isolate the albumin and globulin fractions of proteins, quantify their stability, detect proteins in biological fluids and release them in order to obtain a protein-free solution.

reversible precipitation.

Under the influence of precipitation factors, proteins precipitate, but after the termination of the action (removal) of these factors, the proteins again become soluble and acquire their native properties. One type of reversible protein precipitation is salting out.

salting out. The albumin fraction of proteins precipitates with a saturated solution of ammonium sulfate, and the globulin fraction with a semi-saturated solution.

The essence of the reaction is the dehydration of protein molecules.

Definition progress. 30 drops of an undiluted sample are poured into a test tube and an equal amount of a saturated ammonium sulfate solution is added. Mix the contents of the tube. A semi-saturated solution of ammonium sulfate is obtained, while the globulin fraction precipitates, and the albumin fraction remains in solution. The latter is filtered off, then mixed with ammonium sulfate powder until the dissolution of the salt stops, and a precipitate forms - globulins.

Irreversible precipitation of proteins.

Irreversible precipitation of proteins is associated with profound disturbances in the structure of proteins (secondary and tertiary) and the loss of their native properties. Such changes in proteins can be caused by boiling, the action of concentrated solutions of mineral and organic acids, salts of heavy metals.

Precipitation at boiling. Proteins are thermolabile compounds and when heated above 50-60 degrees C, they are denatured. The essence of thermal denaturation is the destruction of the hydration shell, the breaking of the bonds stabilizing the protein globule, and the deployment of the protein molecule. The most complete and fastest precipitation occurs at the isoelectric point (when the charge of the molecule is zero), since the protein particles are the least stable in this case. Proteins with acidic properties precipitate in a slightly acidic environment, and proteins with basic properties - in a slightly alkaline one. In strongly acidic or strongly alkaline solutions, the protein denatured when heated does not precipitate, since its particles are recharged and carry a positive charge in the first case, and a negative charge in the second, which increases their stability in solution.

Definition progress. Add 10 drops of sample solution to 4 numbered tubes. Then the 1st tube is heated to boiling, while the solution becomes cloudy, but since the denatured protein particles carry a charge, they do not precipitate. This is due to the fact that egg white has acidic properties (its isoelectric point is 4.8) and is negatively charged in a neutral environment; 1 drop of 1% acetic acid solution is added to the second tube and heated to boiling. The protein precipitates, because. its solution approaches the isoelectric point and the protein loses its charge (one of the factors of protein stability in solution); add 1 drop of 10% acetic acid solution to the 3rd tube and heat to boiling. A precipitate is not formed, since in a strongly acidic medium the protein particles acquire a positive charge (one of the factors of protein stability in solution is preserved); 1 drop of NaOH solution is poured into the 4th tube, heated to a boil. No precipitate is formed, since the negative charge of the protein increases in an alkaline environment.

Precipitation with concentrated mineral acids. Concentrated acids (sulphuric, hydrochloric, nitric, etc.) cause protein denaturation by removing protein stability factors in solution (charge and hydration shell). However, with an excess of hydrochloric and sulfuric acid, the precipitated precipitate of denatured protein dissolves again. Apparently, this occurs as a result of the recharging of protein molecules and their partial hydrolysis. When an excess of nitric acid is added, the precipitate does not dissolve. This is why nitric acid is used to detect small amounts of protein in the urine in clinical studies.

Definition progress. 5 drops of concentrated sulfuric, hydrochloric and nitric acids are poured into three test tubes. Then, tilting the test tube at an angle of 45 degrees, the same volume of sample is carefully layered along the wall. At the boundary of the two layers, a protein precipitate appears in the form of a white ring. Shake the test tubes carefully, observe the dissolution of the protein in the test tubes with sulfuric and hydrochloric acids; no protein dissolution occurs in the test tube with nitric acid.

Precipitation by organic acids. Trichloroacetic acid precipitates only proteins, and sulfosalicylic acid precipitates not only proteins, but also high-molecular peptides.

Definition progress. Add 5 drops of the sample solution into two test tubes. 2 drops of sulfosalicylic acid are added to one of them, and 5 drops of trichloroacetic acid to the other. Protein precipitates in test tubes.

Precipitation of protein by salts of heavy metals. When interacting with salts of lead, copper, mercury, silver and other heavy metals, proteins are denatured and precipitated. However, with an excess of some salts, dissolution of the initially formed precipitate is observed. This is due to the accumulation of metal ions on the surface of the denatured protein and the appearance of a positive charge on the protein molecule.

Definition progress. Add 5 drops of sample to three test tubes. In the first add 1 drop of lead acetate, in the third - 1 drop of silver nitrate. Precipitation occurs in all test tubes. Then 10 drops of silver nitrate are added to the first test tube - there is no dissolution of the precipitate.

Color reactions for proteins

Color reactions are used to establish the protein nature of substances, identify proteins and determine their amino acid composition in various biological fluids.

Biuret reaction for a peptide bond. It is based on the ability of peptide bonds (-CO-NH-) to form colored complex compounds with copper sulfate in an alkaline medium, the color intensity of which depends on the length of the polypeptide chain. The protein solution gives a blue-violet color.

Definition progress. Add 5 drops of the sample solution, 3 drops of NaOH, 1 drop of Cu(OH)2 to the test tube, mix. The contents of the tube acquire a blue-violet color.

Ninhydrin reaction. The essence of the reaction is the formation of a blue-violet colored compound consisting of ninhydrin and amino acid hydrolysis products. This reaction is characteristic of amino groups in the -position present in natural amino acids and proteins.

Definition progress. Add 5 drops of the sample solution to the test tube, then 5 drops of ninhydrin, heat the mixture to a boil. A pink-violet color appears, turning blue-violet over time.

xantoprotein reaction. When concentrated nitric acid is added to the protein solution and heated, a yellow color appears, which turns orange in the presence of alkali. The essence of the reaction is the nitration of the benzene ring of cyclic amino acids with nitric acid to form nitro compounds that precipitate. The reaction reveals the presence of cyclic amino acids in the protein.

Definition progress. Add 3 drops of nitric acid to 5 drops of the sample solution and (carefully!) heat it up. A yellow precipitate appears. After cooling, add (preferably to the precipitate) 10 drops of NaOH, an orange color appears.

Adamkevich's reaction. The amino acid tryptophan in an acidic environment, interacting with acid aldehydes, forms red-violet condensation products.

Definition progress. 10 drops of acetic acid are added to one drop of the sample. Tilting the tube, carefully add 0.5 ml of sulfuric acid drop by drop along the wall so that the liquids do not mix. When the test tube is standing, a red-violet ring appears at the boundary of the liquids.

Fohl reaction. Amino acids containing sulfhydryl groups - SH, undergo alkaline hydrolysis with the formation of sodium sulfide Na2S. The latter, interacting with sodium plumbite (formed during the reaction between lead acetate and NaOH), forms a black or brown precipitate of lead sulfide PbS.

Definition progress. 5 drops of Fohl's reagent are added to 5 drops of the sample solution (an equal volume of 30% NaOH solution is added to a 5% lead acetate solution until the formed precipitate dissolves). and boil for 2-3 minutes. After settling 1-2 min. a black or brown precipitate appears.

3. Experimental part

3.1. Rationale for the choice of the object of study

I chose a chicken egg as the object of my research, as it is the main source of protein and many substances necessary for the human body, and the egg is included in the diet of every person.

Every year, about a billion, that is, thousands of billions of eggs are consumed in the world. Each person eats an average of 200 eggs a year. But eggs are not just an ordinary food item.

Eggs are not only a rich cocktail of nutrients, thanks to eggs your culinary imagination will have no limits. Germans love soft-boiled eggs for breakfast, Americans call their eggs "sunny side up", Spaniards are in love with their tortilla, Italians prefer fritata, a type of omelet, and gourmet Japanese dip raw meat into freshly laid eggs.

Perhaps no other product is used in the kitchen as often as a fresh egg. In pies, desserts, ice cream, gourmet sauces or everyone's favorite egg pasta - everywhere eggs give out their golden yolk color.

The highest quality of protein and the combination of various vital elements make eggs an extremely valuable food product. A large egg contains about nine grams of protein, eight grams of fat, the valuable element lecithin, as well as other minerals and vitamins - with the exception of vitamin C. Vitamins are hidden mainly in the yolk.

The most important vitamin is vitamin A and its provitamins - carotenoids. The so-called "eye vitamin" improves vision. It is needed in the retina of the eye both for the perception of light and darkness, and for color discrimination. Vitamin A also plays an important role in the immune system, promoting the growth and strengthening of hair, skin and teeth.

Chicken eggs are also a source of vitamin B, which is responsible for the smooth metabolism, cell respiration and the formation of red blood cells - erythrocytes.

One egg covers a person's daily requirement for folic acid by 26 percent. This especially unstable vitamin creates new cells and activates growth. Folic acid deficiency is one of the most common forms of vitamin deficiencies and often occurs together with iron deficiency. But eggs are also a real pantry of minerals: calcium, magnesia, potassium, iron, zinc, iodine and fluorine make the egg one of the most nutritious foods on Earth.

Eggs - good source protein, so in the table below, they are used as a basis for comparison with other products. Eggs are assigned a conditional value of 100.

The figures given are for eggs as a whole, not for whites or yolks. Nowadays, it is fashionable to eat only proteins, as they do not contain fat. In fact, the yolks contain no less protein. And the content of vitamins and minerals is even higher.

Based on the data in the table, we can conclude that eggs are the main source of protein.

Compared to other animal products, a chicken egg contains the most complete protein, which is almost completely absorbed by the body. Egg protein contains all the essential amino acids in the most optimal ratios.

Below is a table that shows the weight content of protein in some protein sources and the percentage of that protein that can actually be absorbed by our body.

Table 4 - weight content of protein in products,%

The table shows that, for example, eggs contain only 12% protein, but due to a certain composition of amino acids, 94% of the protein can be absorbed by the body. On the other hand, protein makes up 42% of soy flour, but the composition of this protein allows you to absorb only 61% of this amount.

Based on the data in the table, we can conclude that there is a huge difference between the total protein content of foods (what we read on the labels) and the amount that the body actually uses.

If you look at the list in the table, you can see that foods such as rice, beans, and potatoes contain much less healthy protein than eggs. The reason for this is the too low content of the necessary amino acids necessary for the complete absorption of protein by the body.

Accordingly, proteins that lack essential amino acids are called incomplete; those in which there are enough essential amino acids are complete, egg proteins are complete.

Thus, we can conclude that a chicken egg, compared to other animal products, contains the most complete protein, which is almost completely absorbed by the body. Egg protein contains all the essential amino acids in the most optimal ratios.

According to current Russian standards, marking should be on every egg produced at a poultry farm.

The first character in the label indicates the permissible shelf life:

The letter "D" - denotes a dietary egg, such eggs are sold within 7 days.

The letter "C" - denotes a table egg, which is sold within 25 days.

The second sign in the marking means the category of the egg, depending on its weight:

Selected egg (O) - from 65 to 74.9 g.

Characteristics of the object of study

As an object of study, I chose three samples - chicken eggs produced at Chelyabinsk Poultry Farm OJSC (CHEPFA).

Chelyabinsk Poultry Farm OJSC is one of the five largest poultry enterprises in Russia. The main activity is the production, processing, storage and sale of agricultural products. The main product of the poultry farm is a high-quality chicken egg obtained from the Lohmann LSL-classic cross-country bird. Today JSC Chelyabinsk Poultry Farm unites five structural subdivisions: Chelyabinsk Poultry Farm, Yemanzhelinsky Breeding Farm, Petropavlovsk Grain Complex, Yemanzhelinsky Grain Reception Center and Kurochkino Sanatorium.

Sample No. 1 - dietary egg of the first category (D1), produced on March 26, 2009, having a mass of 62 grams.

Sample No. 2 - table egg of the first category (C1), produced on March 26, 2009, having a mass of 59 grams.

Sample No. 3 is a table egg of choice (CO), produced on March 26, 2009, having a mass of 68 grams.

Method for estimating protein content

As part of the work, the Kjeldahl-Golub micromethod was used as a method for assessing the protein content in the product.

The study is carried out according to the following scheme:

A weighed portion of the test product in a volume of 0.04 g, taken with an accuracy of ±0.0001, is placed in a test tube. Then 2 ml of H2SO4 (specific gravity 1.84) and 1...2 drops of H2O2 (33%) are sequentially introduced. Mineralization is carried out by heating the test tube in a water bath at a temperature of 85 degrees.

In this case, easily oxidized substances are completely oxidized within 1–2 minutes, and the discolored liquid remains colorless upon further heating.

At the end of oxidation, the contents of the test tube are transferred quantitatively into a 100 ml volumetric flask up to the mark. After mixing the contents of the flask well, take a sample of 10 ml and accurately titrate with 0.5 N NaOH against phenolphthalein to determine the amount of alkali needed for neutralization.

After that, a sample of the same solution in 10 ml is taken and transferred to another 100 ml volumetric flask, a prescribed amount of 0.5 N NaOH is added to neutralize the acid. Then make up to the mark with water and shake well. This liquid is used to prepare colored solutions.

Preparation of colored solutions. For this, working and standard solutions are prepared in two volumetric flasks with a capacity of 100 ml. 10 ml of the test solution is poured into one, both flasks are topped up three-quarters with water, after which 4 ml of Nessler's solution are added and brought to the mark.

Then determine the optical density of the obtained colored solutions.

Based on the analysis data, the protein content (%) is calculated using the formula:

where 0.002 is the amount of mg of nitrogen in 1 ml of the standard working solution;

Dm is the optical density of the working solution;

Dm is the optical density of the standard solution;

m is the weight of the weighed portion of the test substance, g;

K - conversion factor of nitrogen to protein, equal to 6.25 for products of animal origin; for products of plant origin 5.7.

3.2. Analysis of the results of our own research

Figure 1 - Protein content in the studied samples

Table 5 - The amount of protein content in the studied samples

Most of the protein is found in the dietary egg of the first category (D1) (Sample No. 1). This is because the diet egg is the freshest egg laid no more than a week ago. According to studies, microbiological processes continue to occur in the egg for a week, i.e. it lives. During a week of storage, the qualitative and quantitative composition of protein and amino acids in eggs does not have time to change much. But in accordance with the literature data, the egg white of a dietary egg protein should contain about 19% protein, and about 18% in the yolk, and the study revealed that the protein content in the protein is 18.7%, and in the yolk 17.6% . It can be concluded that the deviations in the protein content are small, but still there, due to improper storage of the egg.

The selected table egg (CO) (Sample No. 3) contains less protein than a dietary egg, which is explained by the shelf life of the egg. The egg must be stored in a cool, but not too dry place; the best temperature is 0 - +5 °С. If you maintain optimal humidity and carbon dioxide content in it, eggs can be stored for up to 9 months. But at the same time, denaturation and aggregation of the protein in the egg occurs. In accordance with the literature data, the egg white of a table egg should contain about 17% protein, and about 16% in the yolk, and the study revealed that the protein content in the protein is 16.5%, and in the yolk 15.7%. It can be concluded that the deviations in the protein content are small, but still exist, which is explained by the fact that all the necessary conditions are not met during storage.

In the table egg of the first category (C1) (Orazets No. 2), the protein content does not differ much from the protein content in the table egg, which is explained by the fact that the table egg of the first category differs from the table egg only in weight. In the protein of Sample No. 2, the protein content is 16.5%, and in the yolk 15.7%, which corresponds to the literature data, but with some deviations.

In the course of this work, it was revealed that proteins are organic substances of animal or plant origin that provide support for the cellular structure of the human body. Their main element is numerous amino acids.

Amino acids are found in all products of plant and animal origin, but their content and ratio in products is different.

The object of the study was the chicken egg as the main source of protein. Based on the results of the study, it can be concluded that the quality of the eggs of modern producers and the protein content in them correspond to the normalized indicators, but with slight deviations, which is explained by the duration of storage and the possible inconsistency of the egg storage regimen.

In the course of the work, the main goal was achieved: the main sources of proteins were identified - these are products of animal origin - milk, meat, fish, eggs (contain essential amino acids in the most favorable ratios) and vegetable origin, such as peas, beans, buckwheat and pearl barley, millet, rice; and it was also determined that proteins are necessary and vital elements of the chemical composition of food products that perform many functions - plastic, contractile, reserve, regulatory and protective.

Proteins are the basis of a healthy and proper diet, so it is necessary to improve the nutrition culture of the country's population and promote a healthy lifestyle.

Bibliography

1. Potoroko I.Yu., Kalinina I.V. Theoretical foundations of commodity science and examination of consumer goods: Laboratory workshop. - Chelyabinsk: Publishing house of SUSU, 2005. - 97 p.

2. Merchandising of meat and egg products. Commodity science of dairy products and food concentrates: Proc./G. N. Kruglyakov, G. V. Kruglyakova.-M.: Marketing, 2001.

3. Chemical composition of Russian food products / Ed. I. M. Skurikhin, V. A. Tutelyan; Ros. acad. honey. Sciences, Institute of Nutrition.-M.: DeLi print, 2002.

4. http://ru.wikipedia.org/wiki/Proteins

5. http://www.chepfa.ru

Annex 1

Calculation diary

Sample #1. Dietary egg of the first category

Protein: optical density of the test sample - 0.237

sample weight - 0.0465 g

X \u003d (0.002x0.237x100x6.25) / (0.35x0.0465) \u003d 18.1%

Yolk: optical density of the test sample - 0.220

optical density of the standard solution - 0.35

sample weight - 0.0457 g

X \u003d (0.002x0.220x100x6.25) / (0.35x0.0457) \u003d 17.3%

Sample #2. Table egg of the first category

Protein: optical density of the test sample - 0.186

optical density of the standard solution - 0.35

sample weight - 0.0401 g

X \u003d (0.002x0.186x100x6.25) / (0.35x0.0401) \u003d 16.5%

Yolk

optical density of the standard solution - 0.35

sample weight - 0.0406 g

X \u003d (0.002x0.179x100x6.25) / (0.35x0.0406) \u003d 15.7%

Sample #3. Selected table egg

Protein: optical density of the test sample - 0.179

optical density of the standard solution - 0.35

sample weight - 0.0443 g

X \u003d (0.002x0.179x100x6.25) / (0.35x0.0443) \u003d 16.1%

Yolk: optical density of the test sample - 0.176

optical density of the standard solution - 0.35

sample weight - 0.0409 g

X \u003d (0.002x0.176x100x6.25) / (0.35x0.0409) \u003d 15.3%

It is known that living matter is based on organic substances - proteins, fats, carbohydrates and nucleic acids. But the most important among these substances is protein.

Most substances known to science change from solid to liquid when heated. But there are substances that, on the contrary, when heated, turn into solid state. These substances were combined into a separate class by the French chemist Pierre Joseph Macke in 1777. By analogy with egg white, which coagulates when heated, these substances were called proteins. Proteins are otherwise known as proteins. In Greek protein (proteios) means "in first place". This name was given to the protein in 1838, when the Dutch biochemist Gerard Mulder wrote that life on the planet would be impossible without a certain substance, which is the most important of all substances known to science and which is necessarily present in absolutely all plants and animals. Mulder called this substance protein.

Protein is the most complex substance among all nutrients. In every cell of the human body, chemical reactions take place, in which protein plays a very important role.

What is protein made of

Proteins include: nitrogen, oxygen, hydrogen, carbon. But other nutrients do not contain nitrogen.

Protein is a natural polymer. Polymers are substances whose molecules contain a very large number of atoms. Back in the 19th century, the Russian chemist Alexander Mikhailovich Butlerov proved that if the structure of the molecule changes, then the properties of the substance also change. The main building blocks of proteins are amino acids. Proteins contain various combinations of amino acids. Therefore, in nature there is a wide variety of proteins with different properties. With the help of research, approximately 20 amino acids have been discovered that are involved in the creation of proteins.

How is the process of formation of a protein molecule

Amino acids are attached to each other sequentially. As a result of this process, a chain is formed, which is called a polypeptide. Subsequently, the polypeptides may coil or take on another shape. The properties of a protein depend on the composition of amino acids, on how many amino acids are involved in the synthesis, and in what order these amino acids are attached to each other. For example, the synthesis of two proteins involves the same number of amino acids, which also have the same composition. But if these amino acids are located in a different sequence, then we will get two completely different proteins.

If the peptides contain no more than 15 amino acid residues, then they are called oligopeptides. And peptides containing up to several tens of thousands or even hundreds of thousands of amino acid residues are called proteins. The protein molecule has a compact spatial structure. This structure may be in the form of fibers. Such proteins are called fibrillar. They are building proteins. If the protein molecule has a structure in the form of a ball, then the proteins are called globular. These proteins include enzymes, antibodies, and some hormones.

Depending on what amino acids are included in the composition of proteins, proteins are complete and incomplete. Complete proteins contain a complete set of amino acids. Incomplete proteins, some amino acids are missing.

Proteins are also divided into simple and complex. Simple proteins contain only amino acids. The composition of complex proteins, in addition to amino acids, also includes metals, carbohydrates, lipids, nucleic acids.

The role of proteins in the human body

Proteins perform various functions in the human body.

1.Structural. Proteins are part of the cells of all tissues and organs.

2. Protective. The interferon protein is synthesized in the body to protect against viruses.

3. Dvigatelna I. The protein myosin is involved in the process of muscle contraction.

4. Transport. Hemoglobin, which is a protein in the composition of red blood cells, is involved in the transfer of oxygen and carbon dioxide.

5. Energy I. As a result of the oxidation of protein molecules, the energy necessary for the life of the body is released.

6. catalytic I. Protein enzymes act as biological catalysts that increase the rate of chemical reactions in cells.

7. Regulatory I. Hormones regulate various bodily functions. For example, insulin regulates blood sugar levels.

In nature, there are a huge number of proteins that can perform a wide variety of functions. But the most important function of proteins is to maintain life on Earth together with other biomolecules.

The content of the article

PROTEINS (Article 1)- a class of biological polymers present in every living organism. With the participation of proteins, the main processes that ensure the vital activity of the body take place: respiration, digestion, muscle contraction, transmission of nerve impulses. Bone tissue, skin, hair, horn formations of living beings are composed of proteins. For most mammals, the growth and development of the organism occurs due to products containing proteins as a food component. The role of proteins in the body and, accordingly, their structure is very diverse.

The composition of proteins.

All proteins are polymers, the chains of which are assembled from fragments of amino acids. Amino acids are organic compounds containing in their composition (in accordance with the name) an NH 2 amino group and an organic acid, i.e. carboxyl, COOH group. Of all the variety of existing amino acids (theoretically, the number of possible amino acids is unlimited), only those that have only one carbon atom between the amino group and the carboxyl group participate in the formation of proteins. IN general view amino acids involved in the formation of proteins can be represented by the formula: H 2 N–CH(R)–COOH. The R group attached to the carbon atom (the one between the amino and carboxyl groups) determines the difference between the amino acids that make up proteins. This group can consist only of carbon and hydrogen atoms, but more often contains, in addition to C and H, various functional (capable of further transformations) groups, for example, HO-, H 2 N-, etc. There is also an option when R \u003d H.

The organisms of living beings contain more than 100 different amino acids, however, not all are used in the construction of proteins, but only 20, the so-called "fundamental". In table. 1 shows their names (most of the names have developed historically), the structural formula, as well as the widely used abbreviation. All structural formulas are arranged in the table so that the main fragment of the amino acid is on the right.

Table 1. AMINO ACIDS INVOLVED IN THE CREATION OF PROTEINS
Name Structure Designation
GLYCINE GLI
ALANIN ALA
VALIN SHAFT
LEUCINE LEI
ISOLEUCINE ILE
SERIN SER
THREONINE TRE
CYSTEINE CIS
METIONINE MET
LYSINE LIZ
ARGININE ARG
ASPARAGIC ACID ACH
ASPARAGIN ACH
GLUTAMIC ACID GLU
GLUTAMINE GLN
phenylalanine hair dryer
TYROSINE TIR
tryptophan THREE
HISTIDINE GIS
PROLINE PRO
In international practice, the abbreviated designation of the listed amino acids using Latin three-letter or one-letter abbreviations is accepted, for example, glycine - Gly or G, alanine - Ala or A.

Among these twenty amino acids (Table 1), only proline contains an NH group (instead of NH 2) next to the COOH carboxyl group, since it is part of the cyclic fragment.

Eight amino acids (valine, leucine, isoleucine, threonine, methionine, lysine, phenylalanine and tryptophan), placed in the table on a gray background, are called essential, since the body must constantly receive them with protein food for normal growth and development.

A protein molecule is formed as a result of the sequential connection of amino acids, while the carboxyl group of one acid interacts with the amino group of the neighboring molecule, as a result, a –CO–NH– peptide bond is formed and a water molecule is released. On fig. 1 shows the serial connection of alanine, valine and glycine.

Rice. 1 SERIAL CONNECTION OF AMINO ACIDS during the formation of a protein molecule. The path from the terminal amino group H 2 N to the terminal carboxyl group COOH was chosen as the main direction of the polymer chain.

To compactly describe the structure of a protein molecule, the abbreviations for amino acids (Table 1, third column) involved in the formation of the polymer chain are used. The fragment of the molecule shown in Fig. 1 is written as follows: H 2 N-ALA-VAL-GLY-COOH.

Protein molecules contain from 50 to 1500 amino acid residues (shorter chains are called polypeptides). The individuality of a protein is determined by the set of amino acids that make up the polymer chain and, no less important, by the order of their alternation along the chain. For example, the insulin molecule consists of 51 amino acid residues (it is one of the shortest chain proteins) and consists of two interconnected parallel chains of unequal length. The sequence of amino acid fragments is shown in fig. 2.

Rice. 2 INSULIN MOLECULE, built from 51 amino acid residues, fragments of the same amino acids are marked with the corresponding background color. The cysteine ​​amino acid residues (abbreviated designation CIS) contained in the chain form disulfide bridges -S-S-, which link two polymer molecules, or form jumpers within one chain.

Molecules of the amino acid cysteine ​​(Table 1) contain reactive sulfhydride groups -SH, which interact with each other, forming disulfide bridges -S-S-. The role of cysteine ​​in the world of proteins is special, with its participation, cross-links are formed between polymeric protein molecules.

The association of amino acids into a polymer chain occurs in a living organism under the control of nucleic acids, it is they that provide a strict assembly order and regulate the fixed length of the polymer molecule ( cm. NUCLEIC ACIDS).

The structure of proteins.

The composition of the protein molecule, presented in the form of alternating amino acid residues (Fig. 2), is called the primary structure of the protein. Hydrogen bonds arise between the imino groups HN present in the polymer chain and the carbonyl groups CO ( cm. HYDROGEN BOND), as a result, the protein molecule acquires a certain spatial shape, called the secondary structure. The most common are two types of secondary structure in proteins.

The first option, called the α-helix, is implemented using hydrogen bonds within one polymer molecule. The geometric parameters of the molecule, determined by the bond lengths and bond angles, are such that the formation of hydrogen bonds is possible for the H-N and C=O groups, between which there are two peptide fragments H-N-C=O (Fig. 3).

The composition of the polypeptide chain shown in fig. 3 is written in abbreviated form as follows:

H 2 N-ALA VAL-ALA-LEY-ALA-ALA-ALA-ALA-VAL-ALA-ALA-ALA-COOH.

As a result of the contracting action of hydrogen bonds, the molecule takes the form of a helix - the so-called α-helix, it is depicted as a curved helical ribbon passing through the atoms that form the polymer chain (Fig. 4)

Rice. 4 3D MODEL OF A PROTEIN MOLECULE in the form of an α-helix. Hydrogen bonds are shown as green dotted lines. The cylindrical shape of the spiral is visible at a certain angle of rotation (hydrogen atoms are not shown in the figure). The color of individual atoms is given in accordance with international rules, which recommend black for carbon atoms, blue for nitrogen, red for oxygen, and yellow for sulfur (white color is recommended for hydrogen atoms not shown in the figure, in this case the entire structure depicted on a dark background).

Another variant of the secondary structure, called the β-structure, is also formed with the participation of hydrogen bonds, the difference is that the H-N and C=O groups of two or more polymer chains located in parallel interact. Since the polypeptide chain has a direction (Fig. 1), variants are possible when the direction of the chains is the same (parallel β-structure, Fig. 5), or they are opposite (antiparallel β-structure, Fig. 6).

Polymer chains of various compositions can participate in the formation of the β-structure, while the organic groups framing the polymer chain (Ph, CH 2 OH, etc.) in most cases play a secondary role, the mutual arrangement of the H-N and C=O groups is decisive. Since the H-N and C=O groups are directed in different directions relative to the polymer chain (up and down in the figure), it becomes possible for three or more chains to interact simultaneously.

The composition of the first polypeptide chain in Fig. 5:

H 2 N-LEI-ALA-FEN-GLI-ALA-ALA-COOH

The composition of the second and third chain:

H 2 N-GLY-ALA-SER-GLY-TRE-ALA-COOH

The composition of the polypeptide chains shown in fig. 6, the same as in Fig. 5, the difference is that the second chain has the opposite (in comparison with Fig. 5) direction.

It is possible to form a β-structure within one molecule, when a chain fragment in a certain section turns out to be rotated by 180°, in this case, two branches of one molecule have the opposite direction, as a result, an antiparallel β-structure is formed (Fig. 7).

The structure shown in fig. 7 in a flat image, shown in fig. 8 in the form of a three-dimensional model. Sections of the β-structure are usually denoted in a simplified way by a flat wavy ribbon that passes through the atoms that form the polymer chain.

In the structure of many proteins, sections of the α-helix and ribbon-like β-structures alternate, as well as single polypeptide chains. Their mutual arrangement and alternation in the polymer chain is called the tertiary structure of the protein.

Methods for depicting the structure of proteins are shown below using the plant protein crambin as an example. Structural formulas of proteins, often containing up to hundreds of amino acid fragments, are complex, cumbersome and difficult to understand, therefore sometimes simplified structural formulas are used - without symbols of chemical elements (Fig. 9, option A), but at the same time they retain the color of valence strokes in accordance with international rules (Fig. 4). In this case, the formula is presented not in a flat, but in a spatial image, which corresponds to the real structure of the molecule. This method makes it possible, for example, to distinguish between disulfide bridges (similar to those found in insulin, Fig. 2), phenyl groups in the side frame of the chain, etc. The image of molecules in the form of three-dimensional models (balls connected by rods) is somewhat clearer (Fig. 9, option B). However, both methods do not allow showing the tertiary structure, so the American biophysicist Jane Richardson proposed to depict α-structures as spirally twisted ribbons (see Fig. 4), β-structures as flat wavy ribbons (Fig. 8), and connecting them single chains - in the form of thin bundles, each type of structure has its own color. This method of depicting the tertiary structure of a protein is now widely used (Fig. 9, variant B). Sometimes, for greater information content, a tertiary structure and a simplified structural formula are shown together (Fig. 9, variant D). There are also modifications of the method proposed by Richardson: α-helices are depicted as cylinders, and β-structures are in the form of flat arrows indicating the direction of the chain (Fig. 9, option E). Less common is the method in which the entire molecule is depicted as a bundle, where unequal structures are distinguished by different colors, and disulfide bridges are shown as yellow bridges (Fig. 9, variant E).

Option B is the most convenient for perception, when, when depicting the tertiary structure, the structural features of the protein (amino acid fragments, their alternation order, hydrogen bonds) are not indicated, while it is assumed that all proteins contain “details” taken from a standard set of twenty amino acids ( Table 1). The main task in depicting a tertiary structure is to show the spatial arrangement and alternation of secondary structures.

Rice. 9 VARIOUS VERSIONS OF IMAGE OF THE STRUCTURE OF THE CRUMBIN PROTEIN.
A is a structural formula in a spatial image.
B - structure in the form of a three-dimensional model.
B is the tertiary structure of the molecule.
G - a combination of options A and B.
E - simplified image of the tertiary structure.
E - tertiary structure with disulfide bridges.

The most convenient for perception is a three-dimensional tertiary structure (option B), freed from the details of the structural formula.

A protein molecule that has a tertiary structure, as a rule, takes on a certain configuration, which is formed by polar (electrostatic) interactions and hydrogen bonds. As a result, the molecule takes the form of a compact coil - globular proteins (globules, lat. ball), or filamentous - fibrillar proteins (fibra, lat. fiber).

An example of a globular structure is the protein albumin, the protein of a chicken egg belongs to the class of albumins. The polymeric chain of albumin is assembled mainly from alanine, aspartic acid, glycine, and cysteine, alternating in a certain order. The tertiary structure contains α-helices connected by single chains (Fig. 10).

Rice. 10 GLOBULAR STRUCTURE OF ALBUMIN

An example of a fibrillar structure is the fibroin protein. They contain a large amount of glycine, alanine and serine residues (every second amino acid residue is glycine); cysteine ​​residues containing sulfhydride groups are absent. Fibroin, the main component of natural silk and cobwebs, contains β-structures connected by single chains (Fig. 11).

Rice. eleven FIBRILLARY PROTEIN FIBROIN

The possibility of forming a tertiary structure of a certain type is inherent in the primary structure of the protein, i.e. determined in advance by the order of alternation of amino acid residues. From certain sets of such residues, α-helices predominantly arise (there are quite a lot of such sets), another set leads to the appearance of β-structures, single chains are characterized by their composition.

Some protein molecules, while retaining a tertiary structure, are able to combine into large supramolecular aggregates, while they are held together by polar interactions, as well as hydrogen bonds. Such formations are called the quaternary structure of the protein. For example, the ferritin protein, which consists mainly of leucine, glutamic acid, aspartic acid and histidine (ferricin contains all 20 amino acid residues in varying amounts) forms a tertiary structure of four parallel-laid α-helices. When molecules are combined into a single ensemble (Fig. 12), a quaternary structure is formed, which can include up to 24 ferritin molecules.

Fig.12 FORMATION OF THE QUATERNARY STRUCTURE OF THE GLOBULAR PROTEIN FERRITIN

Another example of supramolecular formations is the structure of collagen. It is a fibrillar protein whose chains are built mainly of glycine alternating with proline and lysine. The structure contains single chains, triple α-helices, alternating with ribbon-like β-structures stacked in parallel bundles (Fig. 13).

Fig.13 SUPRAMOLECULAR STRUCTURE OF COLLAGEN FIBRILLARY PROTEIN

Chemical properties of proteins.

Under the action of organic solvents, waste products of some bacteria (lactic acid fermentation) or with an increase in temperature, secondary and tertiary structures are destroyed without damaging its primary structure, as a result, the protein loses solubility and loses biological activity, this process is called denaturation, that is, the loss of natural properties, for example, the curdling of sour milk, the coagulated protein of a boiled chicken egg. At elevated temperatures, the proteins of living organisms (in particular, microorganisms) quickly denature. Such proteins are not able to participate in biological processes, as a result, microorganisms die, so boiled (or pasteurized) milk can be stored longer.

Peptide bonds H-N-C=O, forming the polymer chain of the protein molecule, are hydrolyzed in the presence of acids or alkalis, and the polymer chain breaks, which, ultimately, can lead to the original amino acids. Peptide bonds included in α-helices or β-structures are more resistant to hydrolysis and various chemical attack (compared to the same bonds in single chains). A more delicate disassembly of the protein molecule into its constituent amino acids is carried out in an anhydrous medium using hydrazine H 2 N–NH 2, while all amino acid fragments, except for the last one, form the so-called carboxylic acid hydrazides containing the fragment C (O)–HN–NH 2 ( Fig. 14).

Rice. 14. POLYPEPTIDE CLEAVAGE

Such an analysis can provide information about the amino acid composition of a protein, but it is more important to know their sequence in a protein molecule. One of the methods widely used for this purpose is the action of phenylisothiocyanate (FITC) on the polypeptide chain, which in an alkaline medium attaches to the polypeptide (from the end that contains the amino group), and when the reaction of the medium changes to acidic, it detaches from the chain, taking with it fragment of one amino acid (Fig. 15).

Rice. 15 SEQUENTIAL POLYPEPTIDE Cleavage

Many special methods have been developed for such an analysis, including those that begin to “disassemble” a protein molecule into its constituent components, starting from the carboxyl end.

Cross disulfide bridges S-S (formed by the interaction of cysteine ​​residues, Fig. 2 and 9) are cleaved, turning them into HS-groups by the action of various reducing agents. The action of oxidizing agents (oxygen or hydrogen peroxide) again leads to the formation of disulfide bridges (Fig. 16).

Rice. 16. Cleavage of disulfide bridges

To create additional cross-links in proteins, the reactivity of amino and carboxyl groups is used. More accessible for various interactions are the amino groups that are in the side frame of the chain - fragments of lysine, asparagine, lysine, proline (Table 1). When such amino groups interact with formaldehyde, the process of condensation occurs and cross-bridges –NH–CH2–NH– appear (Fig. 17).

Rice. 17 CREATION OF ADDITIONAL TRANSVERSAL BRIDGES BETWEEN PROTEIN MOLECULES.

The terminal carboxyl groups of the protein are able to react with complex compounds of some polyvalent metals (chromium compounds are more often used), and cross-links also occur. Both processes are used in leather tanning.

The role of proteins in the body.

The role of proteins in the body is diverse.

Enzymes(fermentatio lat. - fermentation), their other name is enzymes (en zumh greek. - in yeast) - these are proteins with catalytic activity, they are able to increase the speed of biochemical processes by thousands of times. Under the action of enzymes, the constituent components of food: proteins, fats and carbohydrates are broken down into simpler compounds, from which new macromolecules are then synthesized, which are necessary for a certain type of body. Enzymes also take part in many biochemical processes of synthesis, for example, in the synthesis of proteins (some proteins help to synthesize others). Cm. ENZYMES

Enzymes are not only highly efficient catalysts, but also selective (direct the reaction strictly in given direction). In their presence, the reaction proceeds with almost 100% yield without the formation of by-products and, at the same time, the flow conditions are mild: normal atmospheric pressure and temperature of a living organism. For comparison, the synthesis of ammonia from hydrogen and nitrogen in the presence of an activated iron catalyst is carried out at 400–500°C and a pressure of 30 MPa, the yield of ammonia is 15–25% per cycle. Enzymes are considered unsurpassed catalysts.

Intensive study of enzymes began in the middle of the 19th century; more than 2,000 different enzymes have now been studied; this is the most diverse class of proteins.

The names of enzymes are as follows: the name of the reagent with which the enzyme interacts, or the name of the catalyzed reaction, is added with the ending -aza, for example, arginase decomposes arginine (Table 1), decarboxylase catalyzes decarboxylation, i.e. elimination of CO 2 from the carboxyl group:

– COOH → – CH + CO 2

Often, to more accurately indicate the role of an enzyme, both the object and the type of reaction are indicated in its name, for example, alcohol dehydrogenase is an enzyme that dehydrogenates alcohols.

For some enzymes discovered quite a long time ago, the historical name (without the ending -aza) has been preserved, for example, pepsin (pepsis, Greek. digestion) and trypsin (thrypsis Greek. liquefaction), these enzymes break down proteins.

For systematization, enzymes are combined into large classes, the classification is based on the type of reaction, the classes are named according to the general principle - the name of the reaction and the ending - aza. Some of these classes are listed below.

Oxidoreductase are enzymes that catalyze redox reactions. The dehydrogenases included in this class carry out proton transfer, for example, alcohol dehydrogenase (ADH) oxidizes alcohols to aldehydes, the subsequent oxidation of aldehydes to carboxylic acids is catalyzed by aldehyde dehydrogenases (ALDH). Both processes occur in the body during the processing of ethanol into acetic acid (Fig. 18).

Rice. 18 TWO-STAGE OXIDATION OF ETHANOL to acetic acid

It is not ethanol that has a narcotic effect, but the intermediate product acetaldehyde, the lower the activity of the ALDH enzyme, the slower the second stage passes - the oxidation of acetaldehyde to acetic acid, and the longer and stronger the intoxicating effect from ingestion of ethanol. The analysis showed that more than 80% of the representatives of the yellow race have a relatively low activity of ALDH and therefore noticeably more severe alcohol tolerance. The reason for this innate reduced activity of ALDH is that part of the glutamic acid residues in the “attenuated” ALDH molecule is replaced by lysine fragments (Table 1).

Transferases- enzymes that catalyze the transfer of functional groups, for example, transiminase catalyzes the transfer of an amino group.

Hydrolases are enzymes that catalyze hydrolysis. The previously mentioned trypsin and pepsin hydrolyze peptide bonds, and lipases cleave the ester bond in fats:

–RC(O)OR 1 + H 2 O → –RC(O)OH + HOR 1

Liase- enzymes that catalyze reactions that take place in a non-hydrolytic way, as a result of such reactions, C-C, C-O, C-N bonds are broken and new bonds are formed. The enzyme decarboxylase belongs to this class

Isomerases- enzymes that catalyze isomerization, for example, the conversion of maleic acid to fumaric acid (Fig. 19), this is an example of cis-trans isomerization (see ISOMERIA).

Rice. 19. ISOMERIZATION OF MALEIC ACID into fumaric acid in the presence of the enzyme.

In the work of enzymes, the general principle is observed, according to which there is always a structural correspondence between the enzyme and the reagent of the accelerated reaction. According to the figurative expression of one of the founders of the doctrine of enzymes, E. Fisher, the reagent approaches the enzyme like a key to a lock. In this regard, each enzyme catalyzes a certain chemical reaction or a group of reactions of the same type. Sometimes an enzyme can act on a single compound, such as urease (uron Greek. - urine) catalyzes only the hydrolysis of urea:

(H 2 N) 2 C \u003d O + H 2 O \u003d CO 2 + 2NH 3

The finest selectivity is shown by enzymes that distinguish between optically active antipodes - left- and right-handed isomers. L-arginase acts only on levorotatory arginine and does not affect the dextrorotatory isomer. L-lactate dehydrogenase acts only on the levorotatory esters of lactic acid, the so-called lactates (lactis lat. milk), while D-lactate dehydrogenase only breaks down D-lactates.

Most of the enzymes act not on one, but on a group of related compounds, for example, trypsin "prefers" to cleave the peptide bonds formed by lysine and arginine (Table 1.)

The catalytic properties of some enzymes, such as hydrolases, are determined solely by the structure of the protein molecule itself, another class of enzymes - oxidoreductases (for example, alcohol dehydrogenase) can only be active in the presence of non-protein molecules associated with them - vitamins that activate Mg, Ca, Zn, Mn and fragments of nucleic acids (Fig. 20).

Rice. 20 ALCOHOLD DEHYDROGENASE MOLECULE

Transport proteins bind and transport various molecules or ions through cell membranes (both inside and outside the cell), as well as from one organ to another.

For example, hemoglobin binds oxygen as blood passes through the lungs and delivers it to various body tissues, where oxygen is released and then used to oxidize food components, this process serves as an energy source (sometimes the term “burning” of food in the body is used).

In addition to the protein part, hemoglobin contains a complex compound of iron with a cyclic porphyrin molecule (porphyros Greek. - purple), which determines the red color of the blood. It is this complex (Fig. 21, left) that plays the role of an oxygen carrier. In hemoglobin, the iron porphyrin complex is located inside the protein molecule and is retained by polar interactions, as well as by a coordination bond with nitrogen in histidine (Table 1), which is part of the protein. The O2 molecule, which is carried by hemoglobin, is attached via a coordination bond to the iron atom from the side opposite to that to which histidine is attached (Fig. 21, right).

Rice. 21 STRUCTURE OF THE IRON COMPLEX

The structure of the complex is shown on the right in the form of a three-dimensional model. The complex is held in the protein molecule by a coordination bond (dashed blue line) between the Fe atom and the N atom in histidine, which is part of the protein. The O 2 molecule, which is carried by hemoglobin, is coordinated (red dotted line) to the Fe atom from the opposite country of the planar complex.

Hemoglobin is one of the most studied proteins, it consists of a-helices connected by single chains and contains four iron complexes. Thus, hemoglobin is like a voluminous package for the transfer of four oxygen molecules at once. The form of hemoglobin corresponds to globular proteins (Fig. 22).

Rice. 22 GLOBULAR FORM OF HEMOGLOBIN

The main "advantage" of hemoglobin is that the addition of oxygen and its subsequent splitting off during transmission to various tissues and organs takes place quickly. Carbon monoxide, CO (carbon monoxide), binds to Fe in hemoglobin even faster, but, unlike O 2 , forms a complex that is difficult to break down. As a result, such hemoglobin is not able to bind O 2, which leads (when large amounts of carbon monoxide are inhaled) to the death of the body from suffocation.

The second function of hemoglobin is the transfer of exhaled CO 2, but not the iron atom, but the H 2 of the N-group of the protein is involved in the process of temporary binding of carbon dioxide.

The "performance" of proteins depends on their structure, for example, replacing the only amino acid residue of glutamic acid in the hemoglobin polypeptide chain with a valine residue (a rarely observed congenital anomaly) leads to a disease called sickle cell anemia.

There are also transport proteins that can bind fats, glucose, amino acids and carry them both inside and outside the cells.

Transport proteins of a special type do not carry the substances themselves, but act as a “transport regulator”, passing certain substances through the membrane (the outer wall of the cell). Such proteins are often called membrane proteins. They have the shape of a hollow cylinder and, being embedded in the membrane wall, ensure the movement of some polar molecules or ions into the cell. An example of a membrane protein is porin (Fig. 23).

Rice. 23 PORIN PROTEIN

Dietary and storage proteins, as the name suggests, serve as sources internal supply, more often for the embryos of plants and animals, as well as in the early stages of development of young organisms. Dietary proteins include albumin (Fig. 10) - the main component of egg white, as well as casein - the main protein of milk. Under the action of the enzyme pepsin, casein curdles in the stomach, which ensures its retention in the digestive tract and efficient absorption. Casein contains fragments of all the amino acids needed by the body.

In ferritin (Fig. 12), which is contained in the tissues of animals, iron ions are stored.

Myoglobin is also a storage protein, which resembles hemoglobin in composition and structure. Myoglobin is concentrated mainly in the muscles, its main role is the storage of oxygen, which hemoglobin gives it. It is rapidly saturated with oxygen (much faster than hemoglobin), and then gradually transfers it to various tissues.

Structural proteins perform a protective function (skin) or support - they hold the body together and give it strength (cartilage and tendons). Their main component is the fibrillar protein collagen (Fig. 11), the most common protein of the animal world, in the body of mammals, it accounts for almost 30% of the total mass of proteins. Collagen has a high tensile strength (the strength of the skin is known), but due to the low content of cross-links in skin collagen, animal skins are not very suitable in their raw form for the manufacture of various products. To reduce the swelling of the skin in water, shrinkage during drying, as well as to increase the strength in the watered state and increase the elasticity in collagen, additional cross-links are created (Fig. 15a), this is the so-called leather tanning process.

In living organisms, collagen molecules that have arisen in the process of growth and development of the organism are not updated and are not replaced by newly synthesized ones. As the body ages, the number of cross-links in collagen increases, which leads to a decrease in its elasticity, and since renewal does not occur, age-related changes appear - an increase in the fragility of cartilage and tendons, the appearance of wrinkles on the skin.

Articular ligaments contain elastin, a structural protein that easily stretches in two dimensions. The resilin protein, which is located at the points of hinge attachment of the wings in some insects, has the greatest elasticity.

Horn formations - hair, nails, feathers, consisting mainly of keratin protein (Fig. 24). Its main difference is the noticeable content of cysteine ​​​​residues, which form disulfide bridges, which gives high elasticity (the ability to restore its original shape after deformation) to hair, as well as woolen fabrics.

Rice. 24. FRAGMENT OF FIBRILLAR PROTEIN KERATIN

For an irreversible change in the shape of a keratin object, you must first destroy the disulfide bridges with the help of a reducing agent, give it a new shape, and then re-create the disulfide bridges with the help of an oxidizing agent (Fig. 16), this is how, for example, perming hair is done.

With an increase in the content of cysteine ​​residues in keratin and, accordingly, an increase in the number of disulfide bridges, the ability to deform disappears, but high strength appears at the same time (horns of ungulates and turtle shells contain up to 18% of cysteine ​​fragments). Mammals have up to 30 different types of keratin.

The keratin-related fibrillar protein fibroin secreted by silkworm caterpillars during cocoon curling, as well as by spiders during web weaving, contains only β-structures connected by single chains (Fig. 11). Unlike keratin, fibroin does not have transverse disulfide bridges, it has a very strong tensile strength (strength per unit cross-section of some web samples is higher than that of steel cables). Due to the absence of cross-links, fibroin is inelastic (it is known that woolen fabrics are almost indelible, and silk fabrics are easily wrinkled).

regulatory proteins.

Regulatory proteins, more commonly referred to as hormones, are involved in various physiological processes. For example, the hormone insulin (Fig. 25) consists of two α-chains connected by disulfide bridges. Insulin regulates metabolic processes involving glucose, its absence leads to diabetes.

Rice. 25 PROTEIN INSULIN

The pituitary gland of the brain synthesizes a hormone that regulates the growth of the body. There are regulatory proteins that control the biosynthesis of various enzymes in the body.

Contractile and motor proteins give the body the ability to contract, change shape and move, primarily, we are talking about muscles. 40% of the mass of all proteins contained in the muscles is myosin (mys, myos, Greek. - muscle). Its molecule contains both a fibrillar and a globular part (Fig. 26)

Rice. 26 MYOSIN MOLECULE

Such molecules combine into large aggregates containing 300–400 molecules.

When the concentration of calcium ions changes in the space surrounding the muscle fibers, a reversible change in the conformation of the molecules occurs - a change in the shape of the chain due to the rotation of individual fragments around the valence bonds. This leads to muscle contraction and relaxation, the signal to change the concentration of calcium ions comes from the nerve endings in the muscle fibers. Artificial muscle contraction can be caused by the action of electrical impulses, leading to a sharp change in the concentration of calcium ions, this is the basis for stimulating the heart muscle to restore the work of the heart.

Protective proteins allow you to protect the body from the invasion of attacking bacteria, viruses and from the penetration of foreign proteins (the generalized name of foreign bodies is antigens). The role of protective proteins is performed by immunoglobulins (their other name is antibodies), they recognize antigens that have penetrated the body and firmly bind to them. In the body of mammals, including humans, there are five classes of immunoglobulins: M, G, A, D and E, their structure, as the name implies, is globular, in addition, they are all built in a similar way. The molecular organization of antibodies is shown below using class G immunoglobulin as an example (Fig. 27). The molecule contains four polypeptide chains connected by three S-S disulfide bridges (in Fig. 27 they are shown with thickened valence bonds and large S symbols), in addition, each polymer chain contains intrachain disulfide bridges. Two large polymer chains (highlighted in blue) contain 400–600 amino acid residues. The other two chains (highlighted in green) are almost half as long, containing approximately 220 amino acid residues. All four chains are located in such a way that the terminal H 2 N-groups are directed in one direction.

Rice. 27 SCHEMATIC DRAWING OF THE STRUCTURE OF IMMUNOGLOBULIN

After the body comes into contact with a foreign protein (antigen), the cells of the immune system begin to produce immunoglobulins (antibodies), which accumulate in the blood serum. At the first stage, the main work is done by chain sections containing terminal H 2 N (in Fig. 27, the corresponding sections are marked in light blue and light green). These are antigen capture sites. In the process of immunoglobulin synthesis, these sites are formed in such a way that their structure and configuration correspond as much as possible to the structure of the approaching antigen (like a key to a lock, like enzymes, but the tasks in this case are different). Thus, for each antigen, a strictly individual antibody is created as an immune response. Not a single known protein can change its structure so “plastically” depending on external factors, in addition to immunoglobulins. Enzymes solve the problem of structural conformity to the reagent in a different way - with the help of a gigantic set of various enzymes for all possible cases, and immunoglobulins each time rebuild the "working tool". Moreover, the hinge region of the immunoglobulin (Fig. 27) provides the two capture regions with some independent mobility, as a result, the immunoglobulin molecule can immediately “find” the two most convenient regions for capture in the antigen in order to securely fix it, this resembles the actions of a crustacean creature.

Next, a chain of successive reactions of the body's immune system is turned on, immunoglobulins of other classes are connected, as a result, the foreign protein is deactivated, and then the antigen (foreign microorganism or toxin) is destroyed and removed.

After contact with the antigen, the maximum concentration of immunoglobulin is reached (depending on the nature of the antigen and individual characteristics the organism itself) within a few hours (sometimes several days). The body retains the memory of such contact, and when attacked again with the same antigen, immunoglobulins accumulate in the blood serum much faster and in greater quantities - acquired immunity occurs.

The above classification of proteins is to a certain extent conditional, for example, the thrombin protein, mentioned among protective proteins, is essentially an enzyme that catalyzes the hydrolysis of peptide bonds, that is, it belongs to the class of proteases.

Protective proteins are often referred to as snake venom proteins and the toxic proteins of some plants, since their task is to protect the body from damage.

There are proteins whose functions are so unique that it makes it difficult to classify them. For example, the protein monellin, found in an African plant, is very sweet tasting and has been the subject of study as a non-toxic substance that can be used in place of sugar to prevent obesity. The blood plasma of some Antarctic fish contains proteins with antifreeze properties that keep the blood of these fish from freezing.

Artificial synthesis of proteins.

The condensation of amino acids leading to a polypeptide chain is a well-studied process. It is possible to carry out, for example, the condensation of any one amino acid or a mixture of acids and obtain, respectively, a polymer containing the same units, or different units, alternating in random order. Such polymers bear little resemblance to natural polypeptides and do not possess biological activity. The main task is to connect amino acids in a strictly defined, pre-planned order in order to reproduce the sequence of amino acid residues in natural proteins. The American scientist Robert Merrifield proposed an original method that made it possible to solve such a problem. The essence of the method is that the first amino acid is attached to an insoluble polymer gel that contains reactive groups that can combine with –COOH – groups of the amino acid. Cross-linked polystyrene with chloromethyl groups introduced into it was taken as such a polymeric substrate. So that the amino acid taken for the reaction does not react with itself and so that it does not join the H 2 N-group to the substrate, the amino group of this acid is pre-blocked with a bulky substituent [(C 4 H 9) 3] 3 OS (O) -group. After the amino acid has attached to the polymeric support, the blocking group is removed and another amino acid is introduced into the reaction mixture, in which the H 2 N group is also previously blocked. In such a system, only the interaction of the H 2 N-group of the first amino acid and the –COOH group of the second acid is possible, which is carried out in the presence of catalysts (phosphonium salts). Then the whole scheme is repeated, introducing the third amino acid (Fig. 28).

Rice. 28. SYNTHESIS SCHEME OF POLYPEPTIDE CHAINS

In the last step, the resulting polypeptide chains are separated from the polystyrene support. Now the whole process is automated, there are automatic peptide synthesizers that operate according to the described scheme. Many peptides used in medicine and agriculture have been synthesized by this method. It was also possible to obtain improved analogues of natural peptides with selective and enhanced action. Some small proteins have been synthesized, such as the hormone insulin and some enzymes.

There are also methods of protein synthesis that replicate natural processes: they synthesize fragments of nucleic acids configured to produce certain proteins, then these fragments are inserted into a living organism (for example, into a bacterium), after which the body begins to produce the desired protein. In this way, significant amounts of hard-to-reach proteins and peptides, as well as their analogues, are now obtained.

Proteins as food sources.

Proteins in a living organism are constantly broken down into their original amino acids (with the indispensable participation of enzymes), some amino acids pass into others, then proteins are synthesized again (also with the participation of enzymes), i.e. the body is constantly renewing itself. Some proteins (collagen of the skin, hair) are not renewed, the body continuously loses them and instead synthesizes new ones. Proteins as food sources perform two main functions: they supply the body with building material for the synthesis of new protein molecules and, in addition, supply the body with energy (sources of calories).

Carnivorous mammals (including humans) get the necessary proteins from plant and animal foods. None of the proteins obtained from food is integrated into the body in an unchanged form. In the digestive tract, all absorbed proteins are broken down to amino acids, and proteins necessary for a particular organism are already built from them, while the remaining 12 can be synthesized from 8 essential acids (Table 1) in the body if they are not supplied in sufficient quantities with food, but essential acids must be supplied with food without fail. Sulfur atoms in cysteine ​​are obtained by the body with the essential amino acid methionine. Part of the proteins breaks down, releasing the energy necessary to maintain life, and the nitrogen contained in them is excreted from the body with urine. Usually the human body loses 25–30 g of protein per day, so protein foods must always be present in the right amount. The minimum daily requirement for protein is 37 g for men and 29 g for women, but the recommended intake is almost twice as high. When evaluating foods, it is important to consider protein quality. In the absence or low content of essential amino acids, the protein is considered of low value, so such proteins should be consumed in greater quantities. So, the proteins of legumes contain little methionine, and the proteins of wheat and corn are low in lysine (both amino acids are essential). Animal proteins (excluding collagens) are classified as complete foods. A complete set of all essential acids contains milk casein, as well as cottage cheese and cheese prepared from it, so a vegetarian diet, if it is very strict, i.e. “dairy-free”, requires increased consumption of legumes, nuts and mushrooms to supply the body with essential amino acids in the right amount.

Synthetic amino acids and proteins are also used as food products, adding them to feed, which contain essential amino acids in small quantities. There are bacteria that can process and assimilate oil hydrocarbons, in this case, for the full synthesis of proteins, they need to be fed with nitrogen-containing compounds (ammonia or nitrates). The protein obtained in this way is used as feed for livestock and poultry. A set of enzymes, carbohydrases, are often added to animal feed, which catalyze the hydrolysis of carbohydrate food components that are difficult to decompose (the cell walls of grain crops), as a result of which plant foods are more fully absorbed.

Mikhail Levitsky

PROTEINS (Article 2)

(proteins), a class of complex nitrogen-containing compounds, the most characteristic and important (along with nucleic acids) components of living matter. Proteins perform many and varied functions. Most proteins are enzymes that catalyze chemical reactions. Many hormones that regulate physiological processes are also proteins. Structural proteins such as collagen and keratin are the main components of bone tissue, hair and nails. The contractile proteins of muscles have the ability to change their length, using chemical energy to perform mechanical work. Proteins are antibodies that bind and neutralize toxic substances. Some proteins that can respond to external influences (light, smell) serve as receptors in the sense organs that perceive irritation. Many proteins located inside the cell and on the cell membrane perform regulatory functions.

In the first half of the 19th century many chemists, and among them primarily J. von Liebig, gradually came to the conclusion that proteins are a special class of nitrogenous compounds. The name "proteins" (from the Greek protos - the first) was proposed in 1840 by the Dutch chemist G. Mulder.

PHYSICAL PROPERTIES

Proteins are white in the solid state, but colorless in solution, unless they carry some chromophore (colored) group, such as hemoglobin. The solubility in water of different proteins varies greatly. It also varies with pH and with the concentration of salts in the solution, so that one can choose the conditions under which one protein will selectively precipitate in the presence of other proteins. This "salting out" method is widely used to isolate and purify proteins. The purified protein often precipitates out of solution as crystals.

In comparison with other compounds, the molecular weight of proteins is very large - from several thousand to many millions of daltons. Therefore, during ultracentrifugation, proteins are precipitated, and, moreover, at different rates. Due to the presence of positively and negatively charged groups in protein molecules, they move at different speeds in an electric field. This is the basis of electrophoresis, a method used to isolate individual proteins from complex mixtures. Purification of proteins is also carried out by chromatography.

CHEMICAL PROPERTIES

Structure.

Proteins are polymers, i.e. molecules built like chains from repeating monomer units, or subunits, whose role is played by alpha-amino acids. General formula of amino acids

where R is a hydrogen atom or some organic group.

A protein molecule (polypeptide chain) may consist of only a relatively small number of amino acids or several thousand monomer units. The connection of amino acids in a chain is possible because each of them has two different chemical groups: an amino group with basic properties, NH2, and an acidic carboxyl group, COOH. Both of these groups are attached to the a carbon atom. The carboxyl group of one amino acid can form an amide (peptide) bond with the amino group of another amino acid:

After two amino acids have been connected in this way, the chain can be extended by adding a third to the second amino acid, and so on. As can be seen from the above equation, when a peptide bond is formed, a water molecule is released. In the presence of acids, alkalis or proteolytic enzymes, the reaction proceeds in the opposite direction: the polypeptide chain is cleaved into amino acids with the addition of water. This reaction is called hydrolysis. Hydrolysis proceeds spontaneously, and energy is required to combine amino acids into a polypeptide chain.

A carboxyl group and an amide group (or an imide group similar to it - in the case of the amino acid proline) are present in all amino acids, while the differences between amino acids are determined by the nature of that group, or "side chain", which is indicated above by the letter R. The role of the side chain can be played by one a hydrogen atom, like the amino acid glycine, and some bulky grouping, like histidine and tryptophan. Some side chains are chemically inert, while others are highly reactive.

Many thousands of different amino acids can be synthesized, and many different amino acids occur in nature, but only 20 types of amino acids are used for protein synthesis: alanine, arginine, asparagine, aspartic acid, valine, histidine, glycine, glutamine, glutamic acid, isoleucine, leucine, lysine , methionine, proline, serine, tyrosine, threonine, tryptophan, phenylalanine and cysteine ​​(in proteins, cysteine ​​may be present as a dimer - cystine). True, in some proteins there are other amino acids in addition to the regularly occurring twenty, but they are formed as a result of modification of any of the twenty listed after it has been included in the protein.

optical activity.

All amino acids, with the exception of glycine, have four different groups attached to the α-carbon atom. In terms of geometry, four different groups can be attached in two ways, and accordingly there are two possible configurations, or two isomers, related to each other as an object to its mirror image, i.e. like left hand to right. One configuration is called left, or left-handed (L), and the other is called right-handed, or right-handed (D), since two such isomers differ in the direction of rotation of the plane polarized light. Only L-amino acids occur in proteins (the exception is glycine; it can only be represented in one form, since two of its four groups are the same), and they all have optical activity (since there is only one isomer). D-amino acids are rare in nature; they are found in some antibiotics and the cell wall of bacteria.

The sequence of amino acids.

Amino acids in the polypeptide chain are not arranged randomly, but in a certain fixed order, and it is this order that determines the functions and properties of the protein. By varying the order of the 20 types of amino acids, you can get a huge number of different proteins, just like you can make up many different texts from the letters of the alphabet.

In the past, determining the amino acid sequence of a protein often took several years. Direct definition and now a rather laborious task, although devices have been created that allow it to be carried out automatically. It is usually easier to determine the nucleotide sequence of the corresponding gene and derive the amino acid sequence of the protein from it. To date, the amino acid sequences of many hundreds of proteins have already been determined. The functions of decoded proteins are usually known, and this helps to imagine the possible functions of similar proteins formed, for example, in malignant neoplasms.

Complex proteins.

Proteins consisting of only amino acids are called simple. Often, however, a metal atom or some chemical compound that is not an amino acid is attached to the polypeptide chain. Such proteins are called complex. An example is hemoglobin: it contains iron porphyrin, which gives it its red color and allows it to act as an oxygen carrier.

The names of most complex proteins contain an indication of the nature of the attached groups: sugars are present in glycoproteins, fats in lipoproteins. If the catalytic activity of the enzyme depends on the attached group, then it is called a prosthetic group. Often, some vitamin plays the role of a prosthetic group or is part of it. Vitamin A, for example, attached to one of the proteins of the retina, determines its sensitivity to light.

Tertiary structure.

What is important is not so much the amino acid sequence of the protein (primary structure), but the way it is laid in space. Along the entire length of the polypeptide chain, hydrogen ions form regular hydrogen bonds, which give it the shape of a spiral or layer (secondary structure). From the combination of such helices and layers, a compact form of the next order arises - the tertiary structure of the protein. Around the bonds that hold the monomeric links of the chain, rotations through small angles are possible. Therefore, from a purely geometric point of view, the number of possible configurations for any polypeptide chain is infinitely large. In reality, each protein normally exists in only one configuration, determined by its amino acid sequence. This structure is not rigid, it seems to "breathe" - it oscillates around a certain average configuration. The chain is folded into a configuration in which the free energy (the ability to do work) is minimal, just as a released spring is compressed only to a state corresponding to a minimum of free energy. Often, one part of the chain is rigidly linked to the other by disulfide (–S–S–) bonds between two cysteine ​​residues. This is partly why cysteine ​​among amino acids plays a particularly important role.

The complexity of the structure of proteins is so great that it is not yet possible to calculate the tertiary structure of a protein, even if its amino acid sequence is known. But if it is possible to obtain protein crystals, then its tertiary structure can be determined by X-ray diffraction.

In structural, contractile, and some other proteins, the chains are elongated and several slightly folded chains lying side by side form fibrils; fibrils, in turn, fold into larger formations - fibers. However, most proteins in solution are globular: the chains are coiled in a globule, like yarn in a ball. Free energy with this configuration is minimal, since hydrophobic ("water-repelling") amino acids are hidden inside the globule, and hydrophilic ("water-attracting") amino acids are on its surface.

Many proteins are complexes of several polypeptide chains. This structure is called the quaternary structure of the protein. The hemoglobin molecule, for example, is made up of four subunits, each of which is a globular protein.

Structural proteins due to their linear configuration form fibers in which the tensile strength is very high, while the globular configuration allows proteins to enter into specific interactions with other compounds. On the surface of the globule, with the correct laying of chains, cavities of a certain shape appear, in which reactive chemical groups are located. If this protein is an enzyme, then another, usually smaller, molecule of some substance enters such a cavity, just as a key enters a lock; in this case, the configuration of the electron cloud of the molecule changes under the influence of chemical groups located in the cavity, and this forces it to react in a certain way. In this way, the enzyme catalyzes the reaction. Antibody molecules also have cavities in which various foreign substances bind and are thereby rendered harmless. The "key and lock" model, which explains the interaction of proteins with other compounds, makes it possible to understand the specificity of enzymes and antibodies, i.e. their ability to react only with certain compounds.

Proteins in different types of organisms.

Proteins that perform the same function in different types plants and animals, and therefore bearing the same name, have a similar configuration. They, however, differ somewhat in their amino acid sequence. As species diverge from a common ancestor, some amino acids in certain positions are replaced by mutations with others. Harmful mutations that cause hereditary diseases are discarded by natural selection, but beneficial or at least neutral ones can be preserved. The closer two biological species are to each other, the less differences are found in their proteins.

Some proteins change relatively quickly, others are quite conservative. The latter include, for example, cytochrome c, a respiratory enzyme found in most living organisms. In humans and chimpanzees, its amino acid sequences are identical, while in cytochrome c of wheat, only 38% of the amino acids turned out to be different. Even when comparing humans and bacteria, the similarity of cytochromes with (the differences here affect 65% of amino acids) can still be seen, although the common ancestor of bacteria and humans lived on Earth about two billion years ago. Nowadays, comparison of amino acid sequences is often used to build a phylogenetic (genealogical) tree that reflects the evolutionary relationships between different organisms.

Denaturation.

The synthesized protein molecule, folding, acquires its own configuration. This configuration, however, can be destroyed by heating, by changing the pH, by the action of organic solvents, and even by simply agitating the solution until bubbles appear on its surface. A protein altered in this way is called denatured; it loses its biological activity and usually becomes insoluble. Well-known examples of denatured protein are boiled eggs or whipped cream. Small proteins, containing only about a hundred amino acids, are able to renature, i.e. reacquire the original configuration. But most of the proteins are simply transformed into a mass of tangled polypeptide chains and do not restore their previous configuration.

One of the main difficulties in isolating active proteins is their extreme sensitivity to denaturation. This property of proteins finds useful application in the preservation of food products: high temperature irreversibly denatures the enzymes of microorganisms, and the microorganisms die.

PROTEIN SYNTHESIS

For protein synthesis, a living organism must have a system of enzymes capable of attaching one amino acid to another. A source of information is also needed that would determine which amino acids should be connected. Since there are thousands of types of proteins in the body, and each of them consists of an average of several hundred amino acids, the information required must be truly enormous. It is stored (similar to how a record is stored on a magnetic tape) in the nucleic acid molecules that make up genes.

Enzyme activation.

A polypeptide chain synthesized from amino acids is not always a protein in its final form. Many enzymes are first synthesized as inactive precursors and become active only after another enzyme removes a few amino acids from one end of the chain. Some of the digestive enzymes, such as trypsin, are synthesized in this inactive form; these enzymes are activated in the digestive tract as a result of the removal of the terminal fragment of the chain. The hormone insulin, whose molecule in its active form consists of two short chains, is synthesized in the form of a single chain, the so-called. proinsulin. Then the middle part of this chain is removed, and the remaining fragments bind to each other, forming the active hormone molecule. Complex proteins are formed only after a certain chemical group is attached to the protein, and this attachment often also requires an enzyme.

Metabolic circulation.

After feeding an animal with amino acids labeled with radioactive isotopes of carbon, nitrogen or hydrogen, the label is quickly incorporated into its proteins. If labeled amino acids cease to enter the body, then the amount of label in proteins begins to decrease. These experiments show that the resulting proteins are not stored in the body until the end of life. All of them, with a few exceptions, are in a dynamic state, constantly decomposing to amino acids, and then re-synthesized.

Some proteins break down when cells die and are destroyed. This happens all the time, for example, with red blood cells and epithelial cells lining the inner surface of the intestine. In addition, the breakdown and resynthesis of proteins also occur in living cells. Oddly enough, less is known about the breakdown of proteins than about their synthesis. What is clear, however, is that proteolytic enzymes are involved in the breakdown, similar to those that break down proteins into amino acids in the digestive tract.

The half-life of different proteins is different - from several hours to many months. The only exception is collagen molecules. Once formed, they remain stable and are not renewed or replaced. Over time, however, some of their properties, in particular elasticity, change, and since they are not renewed, certain age-related changes are the result of this, for example, the appearance of wrinkles on the skin.

synthetic proteins.

Chemists have long since learned how to polymerize amino acids, but the amino acids combine randomly, so that the products of such polymerization bear little resemblance to natural ones. True, it is possible to combine amino acids in a given order, which makes it possible to obtain some biologically active proteins, in particular insulin. The process is quite complicated, and in this way it is possible to obtain only those proteins whose molecules contain about a hundred amino acids. It is preferable instead to synthesize or isolate the nucleotide sequence of a gene corresponding to the desired amino acid sequence, and then introduce this gene into a bacterium, which will produce by replication a large amount of the desired product. This method, however, also has its drawbacks.

PROTEINS AND NUTRITION

When proteins in the body are broken down into amino acids, these amino acids can be reused for protein synthesis. At the same time, the amino acids themselves are subject to decay, so that they are not fully utilized. It is also clear that during growth, pregnancy, and wound healing, protein synthesis must exceed degradation. The body continuously loses some proteins; these are the proteins of hair, nails and the surface layer of the skin. Therefore, for the synthesis of proteins, each organism must receive amino acids from food.

Sources of amino acids.

Green plants synthesize all 20 amino acids found in proteins from CO2, water and ammonia or nitrates. Many bacteria are also able to synthesize amino acids in the presence of sugar (or some equivalent) and fixed nitrogen, but sugar is ultimately supplied by green plants. In animals, the ability to synthesize amino acids is limited; they obtain amino acids by eating green plants or other animals. In the digestive tract, the absorbed proteins are broken down into amino acids, the latter are absorbed, and the proteins characteristic of the given organism are built from them. None of the absorbed protein is incorporated into body structures as such. The only exception is that in many mammals, part of maternal antibodies can pass intact through the placenta into the fetal circulation, and through maternal milk (especially in ruminants) be transferred to the newborn immediately after birth.

Need for proteins.

It is clear that in order to maintain life, the body must receive a certain amount of protein from food. However, the size of this need depends on a number of factors. The body needs food both as a source of energy (calories) and as a material for building its structures. In the first place is the need for energy. This means that when there are few carbohydrates and fats in the diet, dietary proteins are used not for the synthesis of their own proteins, but as a source of calories. With prolonged fasting, even your own proteins are spent to meet energy needs. If there are enough carbohydrates in the diet, then protein intake can be reduced.

nitrogen balance.

On average approx. 16% of the total protein mass is nitrogen. When the amino acids that make up proteins are broken down, the nitrogen contained in them is excreted from the body in the urine and (to a lesser extent) in the feces in the form of various nitrogenous compounds. Therefore, it is convenient to use such an indicator as nitrogen balance to assess the quality of protein nutrition, i.e. the difference (in grams) between the amount of nitrogen taken into the body and the amount of nitrogen excreted per day. With normal nutrition in an adult, these amounts are equal. In a growing organism, the amount of excreted nitrogen is less than the amount of incoming, i.e. the balance is positive. With a lack of protein in the diet, the balance is negative. If there are enough calories in the diet, but the proteins are completely absent in it, the body saves proteins. At the same time, protein metabolism slows down, and the re-utilization of amino acids in protein synthesis proceeds as efficiently as possible. However, losses are inevitable, and nitrogenous compounds are still excreted in the urine and partly in the feces. The amount of nitrogen excreted from the body per day during protein starvation can serve as a measure of the daily lack of protein. It is natural to assume that by introducing into the diet an amount of protein equivalent to this deficiency, it is possible to restore the nitrogen balance. However, it is not. Having received this amount of protein, the body begins to use amino acids less efficiently, so some additional protein is required to restore the nitrogen balance.

If the amount of protein in the diet exceeds what is necessary to maintain nitrogen balance, then there seems to be no harm from this. Excess amino acids are simply used as a source of energy. A particularly striking example is the Eskimo, who consume little carbohydrate and about ten times more protein than is required to maintain nitrogen balance. In most cases, however, using protein as an energy source is not beneficial, since you can get many more calories from a given amount of carbohydrates than from the same amount of protein. In poor countries, the population receives the necessary calories from carbohydrates and consumes a minimum amount of protein.

If the body receives the required number of calories in the form of non-protein products, then the minimum amount of protein that maintains the nitrogen balance is approx. 30 g per day. Approximately as much protein is contained in four slices of bread or 0.5 liters of milk. Several are usually considered optimal. large quantity; recommended from 50 to 70 g.

Essential amino acids.

Until now, protein has been considered as a whole. Meanwhile, in order for protein synthesis to take place, all the necessary amino acids must be present in the body. Some of the amino acids the body of the animal itself is able to synthesize. They are called interchangeable, since they do not have to be present in the diet - it is only important that, in general, the intake of protein as a source of nitrogen is sufficient; then, with a shortage of non-essential amino acids, the body can synthesize them at the expense of those that are present in excess. The remaining "essential" amino acids cannot be synthesized and must be ingested with food. Essential for humans are valine, leucine, isoleucine, threonine, methionine, phenylalanine, tryptophan, histidine, lysine, and arginine. (Although arginine can be synthesized in the body, it is considered an essential amino acid because newborns and growing children produce insufficient amounts of it. On the other hand, for a person of mature age, the intake of some of these amino acids from food may become optional.)

This list of essential amino acids is approximately the same in other vertebrates and even in insects. The nutritional value of proteins is usually determined by feeding them to growing rats and monitoring the weight gain of the animals.

The nutritional value of proteins.

The nutritional value of a protein is determined by the essential amino acid that is most deficient. Let's illustrate this with an example. The proteins of our body contain an average of approx. 2% tryptophan (by weight). Let's say that the diet includes 10 g of protein containing 1% tryptophan, and that there are enough other essential amino acids in it. In our case, 10 g of this defective protein is essentially equivalent to 5 g of a complete one; the remaining 5 g can only serve as a source of energy. Note that since amino acids are practically not stored in the body, and in order for protein synthesis to take place, all amino acids must be present simultaneously, the effect of the intake of essential amino acids can be detected only if all of them enter the body at the same time.

The average composition of most animal proteins is close to the average composition of the proteins of the human body, so we are unlikely to face amino acid deficiency if our diet is rich in foods such as meat, eggs, milk and cheese. However, there are proteins, such as gelatin (a product of collagen denaturation), which contain very few essential amino acids. Vegetable proteins, although they are better than gelatin in this sense, are also poor in essential amino acids; especially little in them lysine and tryptophan. Nevertheless, a purely vegetarian diet is not at all harmful, unless it consumes a slightly larger amount of vegetable proteins, sufficient to provide the body with essential amino acids. Most protein is found in plants in the seeds, especially in the seeds of wheat and various legumes. Young shoots, such as asparagus, are also rich in protein.

Synthetic proteins in the diet.

By adding small amounts of synthetic essential amino acids or proteins rich in them to incomplete proteins, such as corn proteins, it is possible to significantly increase the nutritional value of the latter, i.e. thereby increasing the amount of protein consumed. Another possibility is to grow bacteria or yeasts on petroleum hydrocarbons with the addition of nitrates or ammonia as a source of nitrogen. The microbial protein obtained in this way can serve as feed for poultry or livestock, or can be directly consumed by humans. The third, widely used, method uses the physiology of ruminants. In ruminants, in the initial section of the stomach, the so-called. In the rumen, there are special forms of bacteria and protozoa that convert defective plant proteins into more complete microbial proteins, and these, in turn, after digestion and absorption, turn into animal proteins. Urea, a cheap synthetic nitrogen-containing compound, can be added to livestock feed. Microorganisms living in the rumen use urea nitrogen to convert carbohydrates (of which there is much more in the feed) into protein. About a third of all nitrogen in livestock feed can come in the form of urea, which in essence means some chemical protein synthesis.

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CHAPTER 1. INTRODUCTION

Reports of a revolution in biology have now become rather banal. It is also considered indisputable that these revolutionary changes were associated with the formation of a complex of sciences at the intersection of biology and chemistry, among which molecular biology and bioorganic chemistry occupied and continue to occupy a central position.

“Molecular biology is a science that aims to understand the nature of life phenomena by studying biological objects and systems at a level approaching the molecular one ... characteristic manifestations of life ... are due to the structure, properties and interaction of molecules of biologically important substances, primarily proteins and nucleic acids

“Bioorganic chemistry is a science that studies substances that underlie life processes ... the main objects of bio organic chemistry biopolymers (proteins and peptides, nucleic acids and nucleotides, lipids, polysaccharides, etc.).

From this comparison it becomes obvious how important the study of proteins is for the development of modern biology.

biology protein biochemistry

CHAPTER 2. HISTORY OF PROTEIN RESEARCH

2.1 Early stages in protein chemistry

Protein was among the objects of chemical research 250 years ago. In 1728, the Italian scientist Jacopo Bartolomeo Beccari obtained the first protein preparation, gluten, from wheat flour. He subjected gluten to dry distillation and made sure that the products of this distillation were alkaline. This was the first proof of the unity of the nature of the substances of the plant and animal kingdoms. He published the results of his work in 1745, and this was the first paper on a protein.

In the XVIII - early XIX For centuries, protein substances of plant and animal origin have been repeatedly described. A feature of such descriptions was the convergence of these substances and their comparison with inorganic substances.

It is important to note that at that time, even before the advent of elemental analysis, there was an idea that proteins from various sources were a group of individual substances with similar properties.

In 1810, J. Gay-Lussac and L. Tenard first determined the elemental composition of protein substances. In 1833, J. Gay-Lussac proved that nitrogen is necessarily present in proteins, and soon it was shown that the nitrogen content in different proteins is approximately the same. At the same time, the English chemist D. Dalton tried to depict the first formulas of protein substances. He represented them as fairly simple substances, but in order to emphasize their individual differences with the same composition, he resorted to depicting molecules that would now be called isomeric. However, the concept of isomerism did not yet exist in Dalton's time.

Protein formulas by D. Dalton

The first empirical formulas of proteins were derived and the first hypotheses were put forward regarding the regularities of their composition. So, N. Lieberkün believed that albumin is described by the formula C 72 H 112 N 18 SO 22, and A. Danilevsky believed that the molecule of this protein is at least an order of magnitude larger: C 726 H 1171 N 194 S 3 O 214.

The German chemist J. Liebig in 1841 suggested that animal proteins have analogues among vegetable proteins: the assimilation of legumin protein in the animal body, according to Liebig, led to the accumulation of a similar protein - casein. One of the most widespread theories of prestructural organic chemistry was the theory of radicals, the invariable components of related substances. In 1836, the Dutchman G. Mulder suggested that all proteins contain the same radical, which he called protein (from the Greek word “I take the lead”, “I take the first place”). The protein, according to Mulder, had the composition Pr = C 40 H 62 N 10 O 12 . In 1838, G. Mulder published protein formulas based on protein theory. These were the so-called. dualistic formulas, where the protein radical served as a positive grouping, and sulfur or phosphorus atoms as a negative one. Together they formed an electrically neutral molecule: blood serum protein Pr 10 S 2 P, fibrin Pr 10 SP. However, an analytical verification of G. Mulder's data, carried out by the Russian chemist Lyaskovskii, as well as Yu. Liebig, showed that "protein radicals" do not exist.

In 1833, the German scientist F. Rose discovered the biuret reaction for proteins - one of the main color reactions for protein substances and their derivatives at the present time (more on color reactions on page 53). It was also concluded that this was the most sensitive reaction for a protein, so it attracted the most attention from chemists at the time.

In the middle of the 19th century, numerous methods were developed for extracting proteins, purifying and isolating them in solutions of neutral salts. In 1847, K. Reichert discovered the ability of proteins to form crystals. In 1836, T. Schwann discovered pepsin, an enzyme that breaks down proteins. In 1856, L. Corvisar discovered another similar enzyme - trypsin. By studying the action of these enzymes on proteins, biochemists tried to unravel the mystery of digestion. However, the substances resulting from the action of protelytic enzymes (proteases, these include the above enzymes) on proteins attracted the most attention: some of them were fragments of the original protein molecules (they were called peptones ), while others were not subjected to further cleavage by proteases and belonged to the class of compounds known since the beginning of the century - amino acids (the first amino acid derivative, asparagine amide, was discovered in 1806, and the first amino acid, cystine, in 1810). Amino acids in the composition of proteins were first discovered in 1820 by the French chemist A. Braconno. He applied the acid hydrolysis of the protein and found a sweetish substance in the hydrolyzate, which he called glycine. In 1839, the existence of leucine in proteins was proven, and in 1849, F. Bopp isolated another amino acid from protein - tyrosine (see Appendix II for a complete list of the dates of discoveries of amino acids in proteins).

By the end of the 80s. In the 19th century, 19 amino acids were already isolated from protein hydrolysates, and the opinion slowly began to grow stronger that information about the products of protein hydrolysis carries important information about the structure of the protein molecule. However, amino acids were considered essential, but not the main component of the protein.

In connection with the discoveries of amino acids in the composition of proteins, the French scientist P. Schutzenberger in the 70s. XIX century proposed the so-called. ureide theory protein structures. According to it, a protein molecule consisted of a central core, the role of which was played by a tyrosine molecule, and complex groups attached to it (with the substitution of 4 hydrogen atoms), called Schutzenberger leucines . However, the hypothesis was very weakly supported experimentally, and further research proved to be inconsistent.

2.2 Theory of “carbon-nitrogen complexes” A.Ya. Danilevsky

The original theory about the structure of the protein was expressed in the 80s. XIX century Russian biochemist A. Ya. Danilevsky. He was the first chemist to draw attention to the possible polymeric nature of the structure of protein molecules. In the early 70s. he wrote to A.M. Butlerov that “albumin particles are a mixed polymeride”, that for the definition of protein he does not find “a term more suitable than the word polymer in the broad sense”. Studying the biuret reaction, he suggested that this reaction is associated with the structure of intermittent carbon and nitrogen atoms - N - C - N - C - N -, which are included in the so-called. carbonazo T complex R "- NH - CO - NH - CO - R". Based on this formula, Danilevsky believed that the protein molecule contains 40 such carbon-nitrogen complexes. Separate carbon-nitrogen amino acid complexes, according to Danilevsky, looked like this:

According to Danilevsky, carbon-nitrogen complexes could be connected by an ether or amide bond to form a high-molecular structure.

2.3 The theory of “kirins” A. Kossel

The German physiologist and biochemist A. Kossel, studying protamines and histones, relatively simple proteins, found that a large amount of arginine is formed during their hydrolysis. In addition, he discovered in the composition of the hydrolyzate the then unknown amino acid - histidine. Based on this, Kossel suggested that these protein substances can be considered as some of the simplest models of more complex proteins, built, in his opinion, according to the following principle: arginine and histidine form a central core (“protamine core”), which is surrounded by complexes of other amino acids.

Kossel's theory was the most perfect example of the development of the hypothesis of the fragmented structure of proteins (first proposed, as mentioned above, by G. Mulder). This hypothesis was used by the German chemist M. Siegfried at the beginning of the 20th century. He believed that proteins are built from complexes of amino acids (arginine + lysine + glutamine acid), which he called kirinami (from the Greek "kyrios" basic). However, this hypothesis was put forward in 1903, when E. Fisher was actively developing his peptide theory , which gave the key to the mystery of the structure of proteins.

2.4 Peptide theory E. Fisher

The German chemist Emil Fischer, already famous throughout the world for his studies of purine compounds (alkaloids of the caffeine group) and deciphering the structure of sugars, created the peptide theory, which was largely confirmed in practice and received universal recognition during his lifetime, for which he was awarded the second Nobel Prize in the history of chemistry. prizes (the first was received by Ya.G. Van't Hoff).

It is important that Fisher built a research plan that differs sharply from what was done before, but takes into account all the facts known at that time. First of all, he accepted as the most likely hypothesis that proteins are built from amino acids connected by an amide bond:

Fisher called this type of bond (by analogy with peptones) peptide . He suggested that proteins are polymers of amino acids linked by peptide bonds . The idea of ​​the polymeric nature of the structure of proteins, as is well known, was expressed by Danilevsky and Hert, but they believed that “monomers” are very complex formations - peptones or “carbon-nitrogen complexes”.

Proving the peptide type of compound of amino acid residues. E. Fisher proceeded from the following observations. First, both during the hydrolysis of proteins and during their enzymatic decomposition, various amino acids were formed. Other compounds were extremely difficult to describe and even more difficult to obtain. In addition, Fischer knew that proteins do not have a predominance of either acidic or basic properties, which means, he argued, amino and carboxyl groups in the composition of amino acids in protein molecules are closed and, as it were, mask each other (the amphotericity of proteins, as they would say now ).

Fisher divided the solution to the problem of protein structure, reducing it to the following provisions:

Qualitative and quantitative determination of the products of complete hydrolysis of proteins.

Establishing the structure of these final products.

Synthesis of amino acid polymers with amide (peptide) type compounds.

Comparison of the compounds thus obtained with natural proteins.

From this plan it can be seen that Fisher used for the first time a new methodological approach - the synthesis of model compounds, as a way of proving by analogy.

2.5 Development of methods for the synthesis of amino acids

In order to proceed to the synthesis of derivatives of amino acids connected by a peptide bond, Fischer did a great deal of work on the study of the structure and synthesis of amino acids.

Before Fischer, the general method for the synthesis of amino acids was A. Strecker's cyanohydrin synthesis:

According to the Strecker reaction, it was possible to synthesize alanine, serine, and some other amino acids, and according to its modification (Zelinsky-Stadnikov reaction), both -amino acids and their N-substituted ones.

However, Fischer himself sought to develop methods for the synthesis of all the then known amino acids. He considered Strecker's method not universal enough. Therefore, E. Fischer had to look for a general method for the synthesis of amino acids, including amino acids with complex side radicals.

He proposed to aminate bromo-substituted in - position carboxylic acids. To obtain bromo derivatives, he used, for example, in the synthesis of leucine, arylated or alkylated malonic acid:

But E. Fisher failed to create an absolutely universal method. More reliable reactions have also been developed. For example, Fisher's student G. Lakes proposed the following modification to obtain serine:

Fisher also proved that proteins are composed of optically active amino acid residues (see p. 11). This forced him to develop a new nomenclature of optically active compounds, methods for the separation and synthesis of optical isomers of amino acids. Fisher also came to the conclusion that proteins contain residues of the L-forms of optically active amino acids, and he proved this by first using the principle of diastereoisomerism. This principle was as follows: an optically active alkaloid (brucine, strychnine, cinchonine, quinidine, quinine) was added to the N-acyl derivative of a racemic amino acid. As a result, two stereoisomeric forms of salts with different solubility were formed. After separation of these diastereoisomers, the alkaloid was recovered and the acyl group was removed by hydrolysis.

Fischer was able to develop a method for the complete determination of amino acids in the products of protein hydrolysis: he converted the hydrochloride esters of amino acids by treatment with concentrated alkali in the cold into free esters, which were not appreciably saponified. Then the mixture of these ethers was subjected to fractional distillation and individual amino acids were isolated from the resulting fractions by fractional crystallization.

The new method of analysis not only finally confirmed that proteins consist of amino acid residues, but made it possible to refine and supplement the list of amino acids found in proteins. But still, quantitative analyzes could not answer the main question: what are the principles of the structure of a protein molecule. And E. Fisher formulated one of the main tasks in the study of the structure and properties of proteins: the development experimental memethods for the synthesis of compounds whose main components would be amino acidsOyou connected by a peptide bond.

Thus, Fisher set a non-trivial task - to synthesize a new class of compounds in order to establish the principles of their structure.

Fisher solved this problem, and chemists received convincing evidence that proteins are polymers of amino acids connected by a peptide bond:

CO - CHR" - NH - CO - CHR"" - NH - CO CHR""" - NH -

This position was supported by biochemical evidence. Along the way, it turned out that proteases do not hydrolyze all bonds between amino acids at the same rate. Their ability to cleave the peptide bond was affected by the optical configuration of the amino acids, the substituents at the nitrogen of the amino group, the length of the peptide chain, and the set of residues included in it.

The main proof of the peptide theory was the synthesis of model peptides and their comparison with the peptones of the protein hydrolyzate. The results showed that peptides identical to those synthesized are isolated from protein hydrolysates.

In the course of these studies, E.Fischer and his student E.Abdergalden developed for the first time a method for determining the amino acid sequence in a protein. Its essence was to establish the nature of the amino acid residue of the polypeptide having a free amino group (N-terminal amino acid). To do this, they proposed blocking the amino terminus in the peptide with a naphthalene-sulfonyl group, which is not cleaved off during hydrolysis. By isolating the amino acid labeled with such a group from the hydrolyzate, it was possible to determine which of the amino acids was N-terminal.

After E. Fisher's research, it became clear that proteins are polypeptides. This was an important achievement, including for protein synthesis tasks: it became clear what exactly needed to be synthesized. Only after these works did the problem of protein synthesis acquire a certain direction and the necessary rigor.

Speaking about Fisher's work as a whole, it should be noted that the approach to research itself was rather typical of the coming 20th century - it operated with a wide range of theoretical positions and methodological techniques; his syntheses looked less and less like an art based on intuition than on exact knowledge, and approached the creation of a series of precise, almost technological devices.

2. 6 Crisis of peptide theory

In connection with the use of new physical and physico-chemical research methods in the early 20s. 20th century there were doubts that the protein molecule is a long polypeptide chain. The hypothesis about the possibility of compact packing of peptide chains was treated with skepticism. All this required a revision of the peptide theory of E. Fisher.

In the 20-30s. The diketopiperazine theory has been widely adopted. According to it, diketopiperase rings, which are formed during the cyclization of two amino acid residues, play a central role in the construction of the protein structure. It was also assumed that these structures constitute the central core of the molecule, to which short peptides or amino acids are attached (“fillers” of the cyclic skeleton of the main structure). The most convincing schemes for the participation of diketopiperazines in the construction of the protein structure were presented by N.D. Zelinsky and E. Fisher's students.

However, attempts to synthesize model compounds containing diketopiperazines did little for protein chemistry; subsequently, the peptide theory triumphed, but these works had a stimulating effect on the chemistry of piperazines in general.

After the peptide and diketopiperase theories, attempts continued to prove the existence of only peptide structures in the protein molecule. At the same time, they tried to imagine not only the type of molecule, but also its general outlines.

The original hypothesis was expressed by the Soviet chemist D.L. Talmud. He suggested that the peptide chains in the composition of protein molecules are folded into large rings, which in turn was a step towards creating his idea of ​​a protein globule.

At the same time, data appeared indicating a different set of amino acids in different proteins. But the patterns that govern the sequence of amino acids in the protein structure were not clear.

M. Bergman and K. Niemann were the first to try to answer this question in their hypothesis of “intermittent frequencies”. According to it, the sequence of amino acid residues in a protein molecule obeyed numerical patterns, the foundations of which were derived from the principles of the structure of the silk fibroin protein molecule. But this choice was unsuccessful, because. this protein is fibrillar, while the structure of globular proteins obeys completely different patterns.

According to M. Bergman and K. Nieman, each amino acid occurs in the polypeptide chain at a certain interval or, as M. Bergman said, has a certain “periodicity.” This periodicity is determined by the nature of amino acid residues.

They imagined the silk fibroin molecule as follows:

GlyAlaGlyTyr GlyAlaGlyArg GlyAlaGlyx GlyAlaGlyx

(GlyAlaGlyTyr GlyAlaGlyx GlyAlaGlyx GlyAlaGlyx) 12

GlyAlaGlyTyr GlyAlaGlyx GlyAlaGlyx GlyAlaGlyArg

(GlyAlaGlyTyr GlyAlaGlyx GlyAlaGlyx GlyAlaGlyx) 13

The Bergman-Niemann hypothesis had a significant impact on the development of amino acid chemistry, a large number of works were devoted to its verification.

In conclusion of this chapter, it should be noted that by the middle of the XX century. enough evidence of the validity of the peptide theory has been accumulated, its main provisions have been supplemented and refined. Therefore, the center for protein research in the 20th century. already lay the field of research and search for methods of protein synthesis by artificial means. This problem was successfully solved, reliable methods were developed for determining the primary structure of a protein - the sequence of amino acids in the peptide chain, methods for the chemical (abiogenic) synthesis of irregular polypeptides were developed (these methods are discussed in more detail in Chapter 8, p. 36), including methods for automatic synthesis of polypeptides. This made it possible already in 1962 for the largest English chemist F. Senger to decipher the structure and artificially synthesize the hormone insulin, which marked a new era in the synthesis of functional protein polypeptides.

CHAPTER 3. CHEMICAL COMPOSITION OF PROTEINS

3.1 Peptide bond

Proteins are irregular polymers built from α-amino acid residues, the general formula of which in an aqueous solution at pH values ​​close to neutral can be written as NH 3 + CHRCOO - . Amino acid residues in proteins are linked together by an amide bond between α-amino and α-carboxyl groups. Peptide bond between two-amino acid residues are commonly referred to as peptide bond , and polymers built from α-amino acid residues connected by peptide bonds are called polypeptides. A protein as a biologically significant structure can be either a single polypeptide or several polypeptides that form a single complex as a result of non-covalent interactions.

3.2 Elemental composition of proteins

Studying the chemical composition of proteins, it is necessary to find out, firstly, what chemical elements they consist of, and secondly, the structure of their monomers. To answer the first question, the quantitative and qualitative composition of the chemical elements of the protein is determined. Chemical analysis showed present in all proteins carbon (50-55%), oxygen (21-23%), nitrogen (15-17%), hydrogen (6-7%), sulfur (0.3-2.5%). Phosphorus, iodine, iron, copper and some other macro- and microelements were also found in the composition of individual proteins, in various, often very small amounts.

The content of the main chemical elements in proteins can vary, with the exception of nitrogen, the concentration of which is characterized by the greatest constancy and averages 16%. In addition, the content of nitrogen in other organic substances is low. In accordance with this, it was proposed to determine the amount of protein by its constituent nitrogen. Knowing that 1 g of nitrogen is contained in 6.25 g of protein, the found amount of nitrogen is multiplied by a factor of 6.25 and the amount of protein is obtained.

To determine the chemical nature of protein monomers, it is necessary to solve two problems: to separate the protein into monomers and to find out their chemical composition. The breakdown of a protein into its constituent parts is achieved by hydrolysis - prolonged boiling of the protein with strong mineral acids. (acid hydrolysis) or grounds (alkaline hydrolysis). Boiling at 110 C with HCl for 24 hours is most commonly used. At the next stage, the substances that make up the hydrolyzate are separated. For this purpose, various methods are used, most often - chromatography (for more details, see the chapter “Research methods ...”). Amino acids are the main part of the separated hydrolysates.

3.3. Amino acids

Currently, up to 200 different amino acids have been found in various objects of wildlife. In the human body, for example, there are about 60 of them. However, proteins contain only 20 amino acids, sometimes called natural ones.

Amino acids are organic acids in which the hydrogen atom - carbon atom is replaced by an amino group - NH 2. Therefore, by chemical nature, these are amino acids with the general formula:

From this formula it can be seen that the composition of all amino acids includes the following general groups: - CH 2 - NH 2 - COOH. Side chains (radicals - R) amino acids differ. As can be seen from Appendix I, the chemical nature of radicals is diverse: from a hydrogen atom to cyclic compounds. It is the radicals that determine the structural and functional features of amino acids.

All amino acids, except for the simplest aminoacetic to-you glycine (NH 3 + CH 2 COO) have a chiral atom C and can exist in the form of two enantiomers (optical isomers):

All currently studied proteins contain only amino acids of the L-series, in which, if we consider the chiral atom from the side of the H atom, the NH 3 + , COO groups and the R radical are located clockwise. The need to build a biologically significant polymer molecule from a strictly defined enantiomer is obvious - from a racemic mixture of two enantiomers, an unimaginably complex mixture of diastereoisomers would be obtained. The question why life on Earth is based on proteins built precisely from L-, and not D-amino acids, still remains an intriguing mystery. It should be noted that D-amino acids are fairly widespread in nature and, moreover, are part of biologically significant oligopeptides.

Proteins are built from the twenty basic α-amino acids, but the rest, quite diverse amino acids, are formed from these 20 amino acid residues already in the composition of the protein molecule. Among these transformations, one should first of all note the formation disulfide bridges during the oxidation of two cysteine ​​residues in the composition of already formed peptide chains. As a result, a diaminodicarboxylic acid residue is formed from two cysteine ​​residues cystine (See Appendix I). In this case, cross-linking occurs either within one polypeptide chain or between two different chains. As a small protein that has two polypeptide chains connected by disulfide bridges, as well as crosslinks within one of the polypeptide chains:

An important example of modification of amino acid residues is the conversion of proline residues into residues hydroxyproline :

This transformation occurs, and on a significant scale, during the formation of an important protein component of the connective tissue - collagen .

Another very important type of protein modification is the phosphorylation of hydroxo groups of serine, threonine and tyrosine residues, for example:

Amino acids in an aqueous solution are in an ionized state due to the dissociation of amino and carboxyl groups that make up the radicals. In other words, they are amphoteric compounds and can exist either as acids (proton donors) or as bases (donor acceptors).

All amino acids, depending on the structure, are divided into several groups:

Acyclic. Monoaminomonocarboxylic amino acids have in their composition one amine and one carboxyl group, in an aqueous solution they are neutral. Some of them have common structural features, which allows them to be considered together:

Glycine and alanine. Glycine (glycocol or aminoacetic acid) is optically inactive - it is the only amino acid that does not have enantiomers. Glycine is involved in the formation of nucleic and bile to - t, heme, is necessary for the neutralization of toxic products in the liver. Alanine is used by the body in various carbohydrate and energy metabolism processes. Its isomer - alanine is an integral part of the pantothenic vitamin to - you, coenzyme A (CoA), extractive substances of muscles.

Serine and threonine. They belong to the group of hydrohydroxy acids, because. have a hydroxyl group. Serine is a part of various enzymes, the main protein of milk - casein, and also a part of many lipoproteins. Threonine is involved in protein biosynthesis, being an essential amino acid.

cysteine ​​and methionine. Amino acids containing a sulfur atom. The value of cysteine ​​is determined by the presence of a sulfhydryl (-SH) group in its composition, which gives it the ability to easily oxidize and protect the body from substances with a high oxidizing ability (in case of radiation injury, phosphorus poisoning). Methionine is characterized by the presence of an easily mobile methyl group, which is used for the synthesis of important compounds in the body (choline, creatine, thymine, adrenaline, etc.)

Valine, leucine and isoleucine. They are branched amino acids that are actively involved in metabolism and are not synthesized in the body.

Monoaminodicarboxylic amino acids have one amino and two carboxyl groups and give an acidic reaction in aqueous solution. These include aspartic and glutamine to-you, asparagine and glutamine. They are part of the inhibitory mediators of the nervous system.

Diaminomonocarboxylic amino acids in aqueous solution have an alkaline reaction due to the presence of two amine groups. Related to them, lysine is necessary for the synthesis of histones and also in a number of enzymes. Arginine is involved in the synthesis of urea, creatine.

Cyclic. These amino acids have an aromatic or heterocyclic nucleus in their composition and, as a rule, are not synthesized in the human body and must be supplied with food. They are actively involved in a variety of metabolic processes. So phenyl-alanine serves as the main source for the synthesis of tyrosine - the precursor of a number of biologically important substances: hormones (thyroxine, adrenaline), some pigments. Tryptophan, in addition to participating in protein synthesis, is a component of vitamin PP, serotonin, tryptamine, and a number of pigments. Histidine is necessary for the synthesis of proteins, is a precursor of histamine, which affects blood pressure and secretion of gastric juice.

CHAPTER 4. STRUCTURE

When studying the composition of proteins, it was found that they are all built according to a single principle and have four levels of organization: primary, secondary, tertiary, and some of them Quaternary structures.

4.1 Primary structure

It is a linear chain of amino acids arranged in a certain sequence and interconnected by peptide bonds. Peptide bond formed by the -carboxyl group of one amino acid and the -amine group of another:

The peptide bond due to the p, -conjugation -bond of the carbonyl group and the p-orbital of the N atom, on which the unshared pair of electrons is located, cannot be considered as a single one and there is practically no rotation around it. For the same reason, the chiral atom C and carbonyl atom Ck of any i-th amino acid residue of the peptide chain and the N and C atoms of the (i+1)-th residue are in the same plane. The carbonyl O atom and the amide H atom are located in the same plane (however, the material accumulated in the study of the structure of proteins shows that this statement is not entirely rigorous: the atoms associated with the peptide nitrogen atom are not in the same plane with it, but form a trihedral pyramid with angles between bonds very close to 120. Therefore, between planes, formed by atoms C i , C i k , O i and N i +1 , H i +1 , C i +1 , there is some angle different from 0. But, as a rule, it does not exceed 1 and does not play a special role). Therefore, geometrically, the polypeptide chain can be considered as formed by such flat fragments containing six atoms each. The mutual arrangement of these fragments, like any mutual arrangement of two planes, must be determined by two angles. As such, it is customary to take torsion angles that characterize rotations around N C and C C k -bonds.

The geometry of any molecule is determined by three groups of geometric characteristics of its chemical bonds - bond lengths, bond angles and torsion angles between bonds adjacent to neighboring atoms. The first two groups are determined to a decisive extent by the nature of the participating atoms and the bonds formed. Therefore, the spatial structure of polymers is mainly determined by the torsion angles between the links of the polymer backbone of the molecules, i.e. polymer chain conformation. That R sion angle , i.e. angle of rotation of the A-B connection around the B-C connection relative to the C- connectionD, is defined as the angle between the planes containing atoms A, B, C and atomsB, C, D.

In such a system, it is possible that the A-B and C-D bonds are located in parallel and are on the same side of the B-C bond. If we consider this system along theIzi B-C, then the connection A-B, as it were, obscures the connectionC- D, so this conformation is calledsvaetsyaobscured. According to the recommendations of the international unions of chemistry IUPAC (International Union of Pure and Applied Chemistry) and IUB (International Union of Biochemistry), the angle between the ABC and BCD planes is considered positive if, in order to bring the conformation into a eclipsed state by turning through an angle of no more than 180, closest to the observer connection must be rotated clockwise. If this bond must be rotated counterclockwise to obtain a eclipsed conformation, then the angle is considered negative. It can be seen that this definition does not depend on which of the bonds is closer to the observer.

In this case, as can be seen from the figure, the orientation of the fragment containing the atoms C i -1 and C i [(i-1)th fragment], and the fragment containing the atoms C i and C i +1 ( i-th fragment) is determined by the torsion angles corresponding to the rotation around the bond N i C i and the bond C i C i k . These angles are usually denoted as and, in the given case, respectively i and i. Their values ​​for all monomer units of the polypeptide chain mainly determine the geometry of this chain. There are no unambiguous values ​​either for the value of each of these angles or for their combinations, although restrictions are imposed on both of them, determined both by the properties of the peptide fragments themselves and by the nature of side radicals, i.e. the nature of the amino acid residues.

To date, amino acid sequences have been established for several thousand different proteins. Recording the structure of proteins in the form of detailed structural formulas is cumbersome and not visual. Therefore, an abbreviated form of writing is used - three-letter or one-letter (vasopressin molecule):

When writing an amino acid sequence in polypeptide or oligopeptide chains using abbreviated symbols, it is assumed, unless otherwise noted, that the α-amino group is on the left and the α-carboxyl group is on the right. The corresponding sections of the polypeptide chain are called the N-terminus (amine end) and the C-terminus (carboxyl end), and the amino acid residues are called the N-terminal and C-terminal residues, respectively.

4.2 Secondary structure

Fragments of the spatial structure of a biopolymer having a periodic structure of the polymer backbone are considered as elements of the secondary structure.

If over a certain section of the chain the angles of the same type, which were mentioned on page 15, are approximately the same, then the structure of the polypeptide chain acquires a periodic character. There are two classes of such structures - spiral and stretched (flat or folded).

Spiral a structure is considered in which all atoms of the same type lie on the same helix. In this case, the spiral is considered right if, when observed along the axis of the spiral, it moves away from the observer in a clockwise direction, and left - if it moves away counterclockwise. The polypeptide chain has a helical conformation if all C atoms are on one helix, all carbonyl atoms C k - on the other, all N atoms - on the third, and the helix pitch for all three groups of atoms should be the same. The number of atoms per one turn of the helix should also be the same, regardless of whether we are talking about atoms C k , C or N. The distance to the common helix for each of these three types of atoms is different.

The main elements of the secondary structure of proteins are -helices and -folds.

Helical protein structures. Several different types of helices are known for polypeptide chains. Among them, the right-handed helix is ​​the most common. The ideal -helix has a pitch of 0.54 nm and the number of atoms of the same type per turn of the helix is ​​3.6, which means a complete periodicity on five turns of the helix every 18 amino acid residues. The values ​​of torsion angles for an ideal α-helix = - 57 = - 47 , and the distances from the atoms forming the polypeptide chain to the axis of the helix are 0.15 nm for N, 0.23 nm for C, and 0.17 nm for C k . Any conformation exists provided that there are factors stabilizing it. In the case of a helix, such factors are the hydrogen bonds formed by each carbonyl atom of the (i + 4)th fragment. An important factor in the stabilization of the α-helix is ​​also the parallel orientation of the dipole moments of peptide bonds.

Folded protein structures. One of the common examples of the folded periodic structure of a protein is the so-called. -folds, consisting of two fragments, each of which is represented by a polypeptide.

Folds are also stabilized by hydrogen bonds between the hydrogen atom of the amine group of one fragment and the oxygen atom of the carboxyl group of another fragment. In this case, the fragments can have both parallel and antiparallel orientation relative to each other.

The structure resulting from such interactions is a corrugated structure. This affects the values ​​of torsion angles and. If in a flat, fully stretched structure they should be 180, then in real β-layers they have the values ​​= - 119 and = + 113. In order for two sections of the polypeptide chain to be located in an orientation that favors the formation of α-folds, a section that has a structure that differs sharply from a periodic one.

4.2.1 Factors affecting secondary structure formation

The structure of a certain section of the polypeptide chain essentially depends on the structure of the molecule as a whole. The factors influencing the formation of areas with a certain secondary structure are very diverse and by no means have been fully identified in all cases. It is known that a number of amino acid residues preferentially occur in α-helical fragments, a number of others - in α-folds, some amino acids - mainly in regions devoid of a periodic structure. The secondary structure is largely determined by the primary structure. In some cases, the physical meaning of such a dependence can be understood from a stereochemical analysis of the spatial structure. For example, as can be seen from the figure, not only side radicals of amino acid residues adjacent along the chain are brought together in the -helix, but also some pairs of residues located on adjacent turns of the helix, first of all, each (i + 1)th residue with (i + 4) -th and with (i+5)-th. Therefore, in positions (i + 1) and (i + 2), (i + 1) and (i + 4), (i + 1) and (i + 5) -helices, two bulky radicals rarely occur simultaneously, such as, for example , as side radicals of tyrosine, tryptophan, isoleucine. Even less compatible with the helix structure is the simultaneous presence of three bulky residues in positions (i+1), (i+2) and (i+5) or (i+1), (i+4) and (i+5). Therefore, such combinations of amino acids in α-helical fragments are rare exceptions.

4.3 Tertiary structure

This term refers to the complete folding in space of the entire polypeptide chain, including the folding of side radicals. A complete picture of the tertiary structure is given by the coordinates of all atoms of the protein. Thanks to the enormous success of X-ray diffraction analysis, such data, with the exception of the coordinates of hydrogen atoms, have been obtained for a significant number of proteins. These are huge amounts of information stored in special data banks on machine-readable media, and their processing is unthinkable without the use of high-speed computers. The coordinates of atoms obtained on computers give full information about the geometry of the polypeptide chain, including the values ​​of the torsion angles, which makes it possible to reveal a helical structure, folds or irregular fragments. An example of such a research approach is the following spatial model of the structure of the phosphoglycerate kinase enzyme:

General scheme of the structure of phosphoglycerate kinase. For clarity, the α-helical sections are presented as cylinders, and the α-folds are presented as ribbons with an arrow indicating the direction of the chain from the N-terminus to the C-terminus. Lines are irregular sections connecting structured fragments.

The image of the complete structure of even a small protein molecule on a plane, whether it is a page of a book or a display screen, is not very informative due to the extremely complex structure of the object. In order for the researcher to be able to visualize the spatial structure of the molecules of complex substances, three-dimensional methods are used. computer graphics, which allows you to display individual parts of molecules and manipulate them, in particular, rotate them in the right angles.

The tertiary structure is formed as a result of non-covalent interactions (electrostatic, ionic, van der Waals forces, etc.) of side radicals framing α-helices and folds and non-periodic fragments of the polypeptide chain. Among the bonds holding the tertiary structure, it should be noted:

a) disulfide bridge (- S - S -)

b) ester bridge (between carboxyl group and hydroxyl group)

c) salt bridge (between carboxyl group and amino group)

d) hydrogen bonds.

In accordance with the shape of the protein molecule due to the tertiary structure, the following groups of proteins are distinguished:

globular proteins. The spatial structure of these proteins in a rough approximation can be represented as a ball or a not too elongated ellipsoid - globatly. As a rule, a significant part of the polypeptide chain of such proteins forms β-helices and β-folds. The ratio between them can be very different. For example, at myoglobin(more about it on page 28) there are 5 helical segments and not a single fold. In immunoglobulins (more details on p. 42), on the contrary, the main elements of the secondary structure are -folds, and -helices are absent altogether. In the above structure of phosphoglycerate kinase, both types of structures are represented approximately the same. In some cases, as can be seen in the example of phosphoglycerate kinase, two or more clearly separated in space (but nevertheless, of course, connected by peptide bridges) parts are clearly visible - domains. Often, different functional regions of a protein are separated into different domains.

fibrillar proteins. These proteins have an elongated filamentous shape; they perform a structural function in the body. In the primary structure, they have repeating sections and form a fairly uniform secondary structure for the entire polypeptide chain. Thus, the protein - creatine (the main protein component of nails, hair, skin) is built from extended - spirals. Silk fibroin consists of periodically repeating fragments Gly - Ala - Gly - Ser, forming folds. There are less common elements of the secondary structure, for example, collagen polypeptide chains that form left spirals with parameters sharply different from those of -helices. In collagen fibers, three helical polypeptide chains are twisted into a single right supercoil:

4.4 Quaternary structure

In most cases, for the functioning of proteins, it is necessary that several polymer chains be combined into a single complex. Such a complex is also considered as a protein consisting of several subunits. The subunit structure often appears in the scientific literature as a quaternary structure.

Proteins consisting of several subunits are widely distributed in nature. A classic example is the quaternary structure of hemoglobin (more details - p. 26). subunits are usually denoted by Greek letters. Hemoglobin has two and two subunits. The presence of several subunits is functionally important - it increases the degree of oxygen saturation. The quaternary structure of hemoglobin is designated as 2 2 .

The subunit structure is characteristic of many enzymes, primarily those that perform complex functions. For example, RNA polymerase from E. coli has a subunit structure 2 ", i.e. it is built from four different types of subunits, and the -subunit is duplicated. This protein performs complex and diverse functions - initiates DNA, binds substrates - ribonucleoside triphosphates, and also transfers nucleotide residues to a growing polyribonucleotide chain and some other functions .

The work of many proteins is subject to the so-called. allosteric regulation- special compounds (effectors) “switch off” or “switch on” the work of the active center of the enzyme. Such enzymes have special effector recognition sites. And there are even special regulatory subunits, which include, among other things, the indicated sections. A classic example is protein kinase enzymes that catalyze the transfer of a phosphoric acid residue from an ATP molecule to substrate proteins.

CHAPTER 5. PROPERTIES

Proteins have a high molecular weight, some are soluble in water, capable of swelling, are characterized by optical activity, mobility in an electric field, and some other properties.

Proteins are actively involved in chemical reactions. This property is due to the fact that the amino acids that make up proteins contain different functional groups that can react with other substances. It is important that such interactions also occur inside the protein molecule, resulting in the formation of peptide, hydrogen disulfide, and other types of bonds. Various compounds and ions can attach to the radicals of amino acids, and hence proteins, which ensures their transport through the blood.

Proteins are macromolecular compounds. These are polymers consisting of hundreds and thousands of amino acid residues - monomers. Accordingly and molecular mass proteins is in the range of 10,000 - 1,000,000. So, ribonuclease (an enzyme that breaks down RNA) contains 124 amino acid residues and its molecular weight is approximately 14,000. Myoglobin (muscle protein), consisting of 153 amino acid residues, has a molecular weight 17,000, and hemoglobin - 64,500 (574 amino acid residues). The molecular weights of other proteins are higher: -globulin (forms antibodies) consists of 1250 amino acids and has a molecular weight of about 150,000, and the molecular weight of the glutamate dehydrogenase enzyme exceeds 1,000,000.

The determination of the molecular weight is carried out by various methods: osmometric, gel filtration, optical, etc. however, the most accurate is the sedimentation method proposed by T. Svedberg. It is based on the fact that during ultracentrifugation with an acceleration of up to 900,000 g, the rate of protein precipitation depends on their molecular weight.

The most important property of proteins is their ability to show both acidic and basic, that is, to act as amphoteric electrolytes. This is ensured by various dissociating groups that make up the amino acid radicals. For example, the acidic properties of the protein are imparted by the carboxyl groups of the aspartic glutamic amino acid, and the alkaline properties are imparted by the radicals of arginine, lysine, and histidine. The more dicarboxylic amino acids a protein contains, the stronger its acidic properties are and vice versa.

These groups also have electric charges that form the overall charge of the protein molecule. In proteins where aspartic and glutamine amino acids predominate, the charge of the protein will be negative; an excess of basic amino acids gives a positive charge to the protein molecule. As a result, in an electric field, proteins will move towards the cathode or anode, depending on the magnitude of their total charge. So, in an alkaline environment (pH 7 - 14), the protein donates a proton and becomes negatively charged, while in an acidic environment (pH 1 - 7), the dissociation of acid groups is suppressed and the protein becomes a cation.

Thus, the factor that determines the behavior of a protein as a cation or anion is the reaction of the medium, which is determined by the concentration of hydrogen ions and is expressed by the pH value. However, at certain pH values, the number of positive and negative charges equalizes and the molecule becomes electrically neutral, i.e. it will not move in an electric field. This pH value of the medium is defined as the isoelectric point of proteins. In this case, the protein is in the least stable state and, with slight changes in pH to the acidic or alkaline side, it easily precipitates. For most natural proteins, the isoelectric point is in a slightly acidic environment (pH 4.8 - 5.4), which indicates the predominance of dicarboxylic amino acids in their composition.

The amphoteric property underlies the buffering properties of proteins and their participation in the regulation of blood pH. The pH value of human blood is constant and is in the range of 7.36 - 7.4, despite various substances of an acidic or basic nature, regularly supplied with food or formed in metabolic processes - therefore, there are special mechanisms for regulating the acid-base balance of the internal environment of the body. Such systems include the one considered in Chap. “Classification” hemoglobin buffer system (page 28). A change in blood pH by more than 0.07 indicates the development of a pathological process. A shift in pH to the acid side is called acidosis, and to the alkaline side is called alkalosis.

Of great importance for the body is the ability of proteins to adsorb on their surface certain substances and ions (hormones, vitamins, iron, copper), which are either poorly soluble in water or are toxic (bilirubin, free fatty acids). Proteins transport them through the blood to places of further transformations or neutralization.

Aqueous solutions of proteins have their own characteristics. First, proteins have a high affinity for water, i.e. They hydrophilic. This means that protein molecules, like charged particles, attract water dipoles, which are located around the protein molecule and form a water or hydrate shell. This shell protects the protein molecules from sticking together and precipitating. The size of the hydration shell depends on the structure of the protein. For example, albumins more easily bind to water molecules and have a relatively large water shell, while globulins, fibrinogen attach water worse, and the hydration shell is smaller. Thus, the stability of an aqueous solution of a protein is determined by two factors: the presence of a charge on the protein molecule and the water shell around it. When these factors are removed, the protein precipitates. This process can be reversible and irreversible.

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    Basic elements and chemical composition of muscle tissue. Types of proteins of sarcoplasm and myofibrils, their content to the total number of proteins, molecular weight, distribution in the structural elements of the muscle. Their functions and role in the body. The structure of the myosin molecule.

    presentation, added 12/14/2014

    Proteins as food sources, their main functions. Amino acids involved in making proteins. The structure of the polypeptide chain. Transformation of proteins in the body. Complete and incomplete proteins. Protein structure, chemical properties, qualitative reactions.

The chemical composition of proteins.

3.1. Peptide bond

Proteins are irregular polymers built from -amino acid residues, the general formula of which in an aqueous solution at pH values ​​close to neutral can be written as NH 3 + CHRCOO - . Residues of amino acids in proteins are interconnected by an amide bond between -amino and -carboxyl groups. Peptide bond between two-amino acid residues are commonly referred to as peptide bond , and polymers built from α-amino acid residues connected by peptide bonds are called polypeptides. A protein as a biologically significant structure can be either a single polypeptide or several polypeptides that form a single complex as a result of non-covalent interactions.

3.2. Elemental composition of proteins

Studying the chemical composition of proteins, it is necessary to find out, firstly, what chemical elements they consist of, and secondly, the structure of their monomers. To answer the first question, the quantitative and qualitative composition of the chemical elements of the protein is determined. Chemical analysis showed present in all proteins carbon (50-55%), oxygen (21-23%), nitrogen (15-17%), hydrogen (6-7%), sulfur (0.3-2.5%). Phosphorus, iodine, iron, copper and some other macro- and microelements were also found in the composition of individual proteins, in various, often very small amounts.

The content of the main chemical elements in proteins can vary, with the exception of nitrogen, the concentration of which is characterized by the greatest constancy and averages 16%. In addition, the content of nitrogen in other organic substances is low. In accordance with this, it was proposed to determine the amount of protein by its constituent nitrogen. Knowing that 1 g of nitrogen is contained in 6.25 g of protein, the found amount of nitrogen is multiplied by a factor of 6.25 and the amount of protein is obtained.

To determine the chemical nature of protein monomers, it is necessary to solve two problems: to separate the protein into monomers and to find out their chemical composition. The breakdown of a protein into its constituent parts is achieved by hydrolysis - prolonged boiling of the protein with strong mineral acids. (acid hydrolysis) or grounds (alkaline hydrolysis). Boiling at 110  C with HCl for 24 hours is most often used. At the next stage, the substances that make up the hydrolyzate are separated. For this purpose, various methods are used, most often chromatography (for more details, see the chapter “Research methods ...”). Amino acids are the main part of the separated hydrolysates.

3.3. Amino acids

Currently, up to 200 different amino acids have been found in various objects of wildlife. In the human body, for example, there are about 60 of them. However, proteins contain only 20 amino acids, sometimes called natural ones.

Amino acids are organic acids in which the hydrogen atom of the -carbon atom is replaced by an amino group - NH 2. Therefore, by chemical nature, these are -amino acids with the general formula:

H - C  - NH 2

From this formula it can be seen that the composition of all amino acids includes the following general groups: - CH 2, - NH 2, - COOH. Side chains (radicals - R) amino acids differ. As can be seen from Appendix I, the chemical nature of radicals is diverse: from a hydrogen atom to cyclic compounds. It is the radicals that determine the structural and functional features of amino acids.

All amino acids, except for the simplest aminoacetic to-you glycine (NH 3 + CH 2 COO ) have a chiral atom C  and can exist in the form of two enantiomers (optical isomers):

COO-COO-

NH3+ RR NH3+

L-isomerD-isomer

All currently studied proteins include only amino acids of the L-series, in which, if we consider the chiral atom from the side of the H atom, the NH 3 + , COO  groups and the R radical are located clockwise. The need to build a biologically significant polymer molecule from a strictly defined enantiomer is obvious - from a racemic mixture of two enantiomers, an unimaginably complex mixture of diastereoisomers would be obtained. The question why life on Earth is based on proteins built precisely from L-, and not D--amino acids, still remains an intriguing mystery. It should be noted that D-amino acids are fairly widespread in nature and, moreover, are part of biologically significant oligopeptides.

Proteins are built from the twenty basic -amino acids, however, the rest, quite diverse amino acids, are formed from these 20 amino acid residues already in the composition of the protein molecule. Among these transformations, one should first of all note the formation disulfide bridges during the oxidation of two cysteine ​​residues in the composition of already formed peptide chains. As a result, a diaminodicarboxylic acid residue is formed from two cysteine ​​residues cystine (See Appendix I). In this case, cross-linking occurs either within one polypeptide chain or between two different chains. As a small protein that has two polypeptide chains connected by disulfide bridges, as well as crosslinks within one of the polypeptide chains:

GIVEQCCASVCSLYQLENYCN

FVNQHLCGSHLVEALYLVCGERGFFYTPKA

An important example of modification of amino acid residues is the conversion of proline residues into residues hydroxyproline :

N-CH-CO-N-CH-CO-

CH 2 CH 2 CH 2 CH 2

CH2CHOH

This transformation occurs, and on a significant scale, during the formation of an important protein component of the connective tissue - collagen .

Another very important type of protein modification is the phosphorylation of hydroxo groups of serine, threonine and tyrosine residues, for example:

– NH – CH – CO – – NH – CH – CO –

CH 2 OH CH 2 OPO 3 2 –

Amino acids in an aqueous solution are in an ionized state due to the dissociation of amino and carboxyl groups that make up the radicals. In other words, they are amphoteric compounds and can exist either as acids (proton donors) or as bases (donor acceptors).

All amino acids, depending on the structure, are divided into several groups:

Acyclic. Monoaminomonocarboxylic amino acids have in their composition one amine and one carboxyl group, in an aqueous solution they are neutral. Some of them have common structural features, which allows them to be considered together:

    Glycine and alanine. Glycine (glycocol or aminoacetic acid) is optically inactive - it is the only amino acid that does not have enantiomers. Glycine is involved in the formation of nucleic and bile to - t, heme, is necessary for the neutralization of toxic products in the liver. Alanine is used by the body in various carbohydrate and energy metabolism processes. Its isomer -alanine is an integral part of the vitamin pantothenic to-you, coenzyme A (CoA), extractive substances of muscles.

    Serine and threonine. They belong to the group of hydrohydroxy acids, because. have a hydroxyl group. Serine is part of various enzymes, the main protein of milk - casein, as well as many lipoproteins. Threonine is involved in protein biosynthesis, being an essential amino acid.

    cysteine ​​and methionine. Amino acids containing a sulfur atom. The value of cysteine ​​is determined by the presence of a sulfhydryl (-SH) group in its composition, which gives it the ability to easily oxidize and protect the body from substances with a high oxidizing ability (in case of radiation injury, phosphorus poisoning). Methionine is characterized by the presence of an easily mobile methyl group, which is used for the synthesis of important compounds in the body (choline, creatine, thymine, adrenaline, etc.)

    Valine, leucine and isoleucine. They are branched amino acids that are actively involved in metabolism and are not synthesized in the body.

Monoaminodicarboxylic amino acids have one amino and two carboxyl groups and give an acidic reaction in aqueous solution. These include aspartic and glutamine to-you, asparagine and glutamine. They are part of the inhibitory mediators of the nervous system.

Diaminomonocarboxylic amino acids in aqueous solution have an alkaline reaction due to the presence of two amine groups. Related to them, lysine is necessary for the synthesis of histones and also in a number of enzymes. Arginine is involved in the synthesis of urea, creatine.

Cyclic. These amino acids have an aromatic or heterocyclic nucleus in their composition and, as a rule, are not synthesized in the human body and must be supplied with food. They are actively involved in a variety of metabolic processes. So

phenyl-alanine is the main source of tyrosine synthesis, a precursor of a number of biologically important substances: hormones (thyroxine, adrenaline), some pigments. Tryptophan, in addition to participating in protein synthesis, is a component of vitamin PP, serotonin, tryptamine, and a number of pigments. Histidine is necessary for the synthesis of proteins, is a precursor of histamine, which affects blood pressure and secretion of gastric juice.

Properties

Proteins are macromolecular compounds. These are polymers consisting of hundreds and thousands of amino acid residues - monomers.

Proteins have a high molecular weight, some are soluble in water, capable of swelling, are characterized by optical activity, mobility in an electric field, and some other properties.

Proteins are actively involved in chemical reactions. This property is due to the fact that the amino acids that make up proteins contain different functional groups that can react with other substances. It is important that such interactions also occur inside the protein molecule, resulting in the formation of peptide, hydrogen disulfide, and other types of bonds. To amino acid radicals, and Respectively and molecular mass proteins is in the range of 10,000 - 1,000,000. So, ribonuclease (an enzyme that breaks down RNA) contains 124 amino acid residues and its molecular weight is approximately 14,000. Myoglobin (muscle protein), consisting of 153 amino acid residues, has a molecular weight 17,000, and hemoglobin - 64,500 (574 amino acid residues). The molecular weights of other proteins are higher: -globulin (forms antibodies) consists of 1250 amino acids and has a molecular weight of about 150,000, and the molecular weight of the glutamate dehydrogenase enzyme exceeds 1,000,000.